View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18467_low_20 (Length: 434)
Name: NF18467_low_20
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18467_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 42 - 421
Target Start/End: Complemental strand, 16555811 - 16555428
Alignment:
| Q |
42 |
tcaatcataatcgttgaatcattaaaatatttgattttaatcgtatctgctcaaatgttatacagatgatggcttgtagctggttg----accgtgtnnn |
137 |
Q |
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| T |
16555811 |
tcaatcataatcgttggatcattaaaatatttgattttaatcgtatctgctcaaatgttatacagatgatggcttgtagctggttggttgaccgtgtaaa |
16555712 |
T |
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| Q |
138 |
nnnnttgcactaatagcaatcaaaatttatctcaaaacaaaatactttttactaccaataatgagaacagtacaatatacatacaatacagatactgtac |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
16555711 |
aaaattgcactaatagcaatcaaaatttatctcaaaacaaaatactttttactaccaataacgagaacagtacaatatacatacaatacagatactgtac |
16555612 |
T |
|
| Q |
238 |
gtgtaaatgtgtaatgaagcaggcagcagagtaatgctaccatggtcatctagaatgcaaatgatcccataggatttgttcatcaatcttactcatcttc |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16555611 |
gtgtaaatgtgtaatgaagcaggcagcagagtaatgctaccatggtcatctagaatgcaaatgatcccataggatttgttcatcaatcttactcatcttc |
16555512 |
T |
|
| Q |
338 |
tcatcatcaagtcgtttccaagtcataattttctgcacacttgtccatgactcttttcccttctgaagttcagccagtataatc |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16555511 |
tcatcatcaagtcgtttccaagtcataattttctgcacacttgtccatgactcttttcccttctgaagttcagccagtataatc |
16555428 |
T |
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