View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18467_low_23 (Length: 418)
Name: NF18467_low_23
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18467_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 40115933 - 40116334
Alignment:
| Q |
1 |
tgaaacagacttatttttgaattcatgatcgataagtcataagcggtgtcctaccaagtactacagcagcatatgaagctgctaactgagatactgccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40115933 |
tgaaacagacttatttttgaattcatgatcgataagtcataagcggtgtcctaccaagtactacagcagcatatgaagctgctaactgagatactgccat |
40116032 |
T |
|
| Q |
101 |
aatgggaattaattgttgagggtatacagtgatgctgagatttgatattattctgaagnnnnnnnttatatctagtgannnnnnnnnncttacagaaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||| |
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| T |
40116033 |
aatgggaattaattgttgagggtatacagtgatgctgagatttgatattattctgaagaaaaaaattatatctagcgattttttttttcttacagaaatt |
40116132 |
T |
|
| Q |
201 |
tatacctagtgatattaaactcctttttatttnnnnnnngttcagataaataaatttcatttaccaaagtatttttcatagtaattggaggccgtaattc |
300 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40116133 |
tatacctagtgatattaaactccattttatttaaaaaaagttcagataaataaatttcatttaccaaagtatttttcatagtaattggaggctgtaattc |
40116232 |
T |
|
| Q |
301 |
attggtatttcaaaatgacaaatagtatgaaaccgataaaataaatatgtgtaacgtgacacttaggttttgtttgaaagttttgagaaaaggggagaga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40116233 |
attggtatttcaaaatgacaaatagtatgaaaccgataaaataaatatgtgtaacgtgacacttaggttttgtttggaagttttgagaaaaggggagaga |
40116332 |
T |
|
| Q |
401 |
gc |
402 |
Q |
| |
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|| |
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| T |
40116333 |
gc |
40116334 |
T |
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