View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18467_low_25 (Length: 416)
Name: NF18467_low_25
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18467_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 136 - 400
Target Start/End: Original strand, 33835857 - 33836121
Alignment:
| Q |
136 |
aagccaaaaacgttgcaagtcaagaaactacataagaaaatactatgctttatgagttgagattcaatgaggaaattgaaacgtaccaaattaaaaatct |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33835857 |
aagccaaaaacgttgcaagtcaagaaactacataagaaaatactatgctttatgagttgagattcaatgaggaaattgaaacgtaccaaattaaaaaact |
33835956 |
T |
|
| Q |
236 |
aacttcctcttgaatagaggaattgagaatgagatgaactaatattaggatggagtatacagtgatagatgcaaacgtatatatattaagattgagtaca |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33835957 |
aacttcctcttgaatagaggaattgagaatgagatgaactaatatgaggatggagtatacagtgatagatgcaaacgtatatatattaagattgagtaca |
33836056 |
T |
|
| Q |
336 |
aaaatggatgtatgtgcaaattacaaccacatgcattatcaacattacacattaatattagtttt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33836057 |
aaaatggatgtatgtgcaaattacaaccacatgcattatcaacattacacattaatattagtttt |
33836121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 33835690 - 33835804
Alignment:
| Q |
10 |
aagaaaatattgtatgattttgtgcatgtttagattaaatattttagcaaaatcacttaagattttgtggttggtaatggtatatatggtgaaaattgaa |
109 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33835690 |
aagaaaatattgtatgacttggtgcatgtttagattaaagattttagcaaaaccacttaagattttgtggttggtaatggtatatatggtgaaaattgaa |
33835789 |
T |
|
| Q |
110 |
acactaattaaagtt |
124 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
33835790 |
acactaattaaagtt |
33835804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University