View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18467_low_26 (Length: 412)
Name: NF18467_low_26
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18467_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 39254538 - 39254887
Alignment:
| Q |
19 |
gcgagggcattctcgtaaaacaaaatcgattatgcctattgataatgagtctaaaagcatgtggaagaagcttttggggtccatgagacctatgcacctt |
118 |
Q |
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| T |
39254538 |
gcgagggcattctcgtaaaacaaaatcgattatgcctattgataatgagtctaaaagcatgtggaagaagcttttggggtccatgagacctatgcacctt |
39254637 |
T |
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| Q |
119 |
caaagcaaccaatcaccaccgcaaattcttaacggtaagaataaccataaaaaagtggttattgaaaataatgttaatagcatcattgatactcaaggag |
218 |
Q |
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| T |
39254638 |
caaagcaaccaatcaccaccgcaaattcttaacggtgagaataaccataaaaaagtggttattgaaaataatgttaatagcatcattgatactcaaggag |
39254737 |
T |
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| Q |
219 |
aggatgggtttcataatgcatcggagtttctgaattcgccgtctccgaccagaagctaccttgcttcggtggctagtagccgctacgcttccgcggtggg |
318 |
Q |
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| T |
39254738 |
aggatgggtttcataatgcatcggagtttctgaattcgccgtctccgaccagaagctgccttgcttcggtggctagtagccgctacgcttccgcggtggg |
39254837 |
T |
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| Q |
319 |
gctaagtgaaatggttgaggaggagaaagaggaagagattgtggaaaagg |
368 |
Q |
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| T |
39254838 |
gctaagtgaaatggttgaggaggagaaagaggaagagattgtggaaaagg |
39254887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 311 - 361
Target Start/End: Original strand, 39254950 - 39255000
Alignment:
| Q |
311 |
gcggtggggctaagtgaaatggttgaggaggagaaagaggaagagattgtg |
361 |
Q |
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| T |
39254950 |
gcggcggggctaaatgaaatggttgaggaggagaaaaaggaagagattgtg |
39255000 |
T |
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