View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18467_low_28 (Length: 360)
Name: NF18467_low_28
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18467_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 9e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 84 - 293
Target Start/End: Original strand, 11546397 - 11546605
Alignment:
| Q |
84 |
tccctgccatatagcatgactcgttttatatttgaaaaatgagagtttggaattagtgatgtgtaagtatgaattctatgaactatctttgtgttgttct |
183 |
Q |
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| T |
11546397 |
tccctgccatatagcatgactcgttttatatttgaaaaatgagagtttggaattagtgatgcgtaagtatgaattctatgaactatctttgtgttgttct |
11546496 |
T |
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| Q |
184 |
atttccttgtgaatcgttaagctaaatgtgaaggaagcaaacctttttaannnnnnnnnncttcggatataaatttattcattatagtgaatatatagta |
283 |
Q |
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| T |
11546497 |
atttccttgtgaatcgttaagctaaatgtgaaggaagcaaacctttttaa-tttttttgtcttcggatataaatttattcattatagtgaatatatagta |
11546595 |
T |
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| Q |
284 |
aataatttgg |
293 |
Q |
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|||||||||| |
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| T |
11546596 |
aataatttgg |
11546605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 280 - 352
Target Start/End: Original strand, 11546658 - 11546730
Alignment:
| Q |
280 |
agtaaataatttggcactcctccataataagaataaagagtttattcccctaattttggttaatattgatgat |
352 |
Q |
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| T |
11546658 |
agtaaataatttggcactcctccataataagaataaagagtttattcccctaattttggttaatatttatgat |
11546730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 11546230 - 11546289
Alignment:
| Q |
19 |
aaaactttctaggtagaggaaagattaaaactcagaaaaagtgagcgtaatacagaaatg |
78 |
Q |
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| T |
11546230 |
aaaactttctaggtagaggaaagattaaaactcagaaaaagtgagcgtaatacagaaatg |
11546289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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