View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18467_low_3 (Length: 603)
Name: NF18467_low_3
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18467_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 509; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 10 - 587
Target Start/End: Complemental strand, 28443935 - 28443358
Alignment:
| Q |
10 |
catcatcattcattagaccattagagatagtacctgatgtgaaatctgaactccataactctaaaccttgagggttggtcagcaccaaaccatgagaatc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28443935 |
catcatcattcattagaccattagagatagtacctgatgtgaaatctgaactccataactctaaaccttgagggttggtcagcaccaaaccatgagaatc |
28443836 |
T |
|
| Q |
110 |
atttaatatcaattttgatcccttaggagcagggttgtttccatttgcataccaaatgatggcatcatcttgtatcttgtcataccatatagctagcaag |
209 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28443835 |
atttaatatcaatcttgatcccttaggagcagggttgtttccatttgcataccaaatgatggcatcatcttgtatcttgtcataccatatagctagcaag |
28443736 |
T |
|
| Q |
210 |
aaaagctcattaggaagttggtaaaatccaaatgaaaaatctcctgaaggagagagccaacgagttgtgccactgccagcaataagtgactcaccaacaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28443735 |
aaaagctcattaggaagttggtaaaatccaaatgaaaaatctcctgaaggagagaaccaacgagttgtgccactgccagcaataagtgactcaccaacaa |
28443636 |
T |
|
| Q |
310 |
tcacaccttgatccaatgattctaagctgcataataaaatagtaatgaataatctttgaaacagattttgtaactgttgttgtccaaatcaatgaatttg |
409 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28443635 |
ttacaccttgatccaatgattctaagctgcataataaaatagtaatgaataatcttagaaacagattttgtaactgttgttgtccaaatcaatgaatttg |
28443536 |
T |
|
| Q |
410 |
nnnnnnnnnnnaatgttagatattagtatgttaattttttcatgttagtatttgtccaaatgatcgaattgatctttatattcacaagttgatttgtata |
509 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28443535 |
tttttttttttaatgttaaatattagtatgttaattttttcatgttagtatttgtccaaatgatcgaattgatctttatattcacacgttgatttgtata |
28443436 |
T |
|
| Q |
510 |
gacagcttaatgttatagataagttaaccaaaagtgggcgcaaactaataacaatctgcaaataagctaaccgataac |
587 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28443435 |
gacaacttaatgttatagataagttaaccaaaagcgggcgcaaactaataacaatttgcaaataagctaaccgataac |
28443358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 10 - 342
Target Start/End: Complemental strand, 28464784 - 28464446
Alignment:
| Q |
10 |
catcatcattcattagaccattagagatagtacctgatgtgaaatctgaactccataactctaaaccttgagggttggtcagcaccaaaccatgagaatc |
109 |
Q |
| |
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||||||||| ||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||| |||| |
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| T |
28464784 |
catcatcatccattagaccattagaaattttacctgatgtgaaatctgatctccataactctaaaccttgagggttggtgagaaccaaaccttgaaaatc |
28464685 |
T |
|
| Q |
110 |
atttaatatcaattttgatcccttaggagcagggttgtttccatttgcataccaaatgatggcatcatcttgtatcttgtcataccatatagctagcaag |
209 |
Q |
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|||||||| |||| |||||||||| || |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
28464684 |
atttaataccaatcttgatcccttgggtgcagggttgtctccatttgcataccaaatgatggcatcattttgtatcttgtcataccaaatagctagcaag |
28464585 |
T |
|
| Q |
210 |
aaaagctcattaggaagttggtaaaatccaaatgaaaaatctcctgaaggagagagccaacgagttgtgccactgccagcaataagtgactcacca---- |
305 |
Q |
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||||| ||||||||||||||||||| ||||||| |||||||| ||||||||||||||| || ||||| ||| ||||||| |||||||||||||| |
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| T |
28464584 |
aaaagtgcattaggaagttggtaaaacccaaatgcaaaatctcttgaaggagagagccatcgggttgtcccattgccagctgtaagtgactcaccaacac |
28464485 |
T |
|
| Q |
306 |
--acaatcacaccttgatccaatgattctaagctgcata |
342 |
Q |
| |
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||| |||| |||||||||||||||| ||||||||||| |
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| T |
28464484 |
tgacactcaccccttgatccaatgattttaagctgcata |
28464446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 343
Target Start/End: Complemental strand, 28486554 - 28486219
Alignment:
| Q |
10 |
catcatcattcattagaccattagagatagtacctgatgtgaaatctgaactccataactctaaaccttgagggttggtcagcaccaaaccatgagaatc |
109 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||| | ||||| || |||||||||| |||||||||||||||||| || ||||||||| ||||||| |
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| T |
28486554 |
catcatcattcattagaccattagaaattgtacctg---taaaatcggatctccataactgtaaaccttgagggttggtgagaaccaaaccacgagaatc |
28486458 |
T |
|
| Q |
110 |
atttaatatcaattttgatcccttaggagcagggttgtttccatttgcataccaaatgatggcatcatcttgtatcttgtcataccatatagctagcaag |
209 |
Q |
| |
|
|||||||| |||| |||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28486457 |
atttaataccaatcttgatcccttag-agcaggtttgtttccatttgcataccaaatgatggtatcatcttgtatcttgtcataccatatagctagcaag |
28486359 |
T |
|
| Q |
210 |
aaaagctcattaggaagttggtaaaatccaaatgaaaaatctcctgaaggagagagccaacgagttgtgccactgccagcaataagtgactcacca---- |
305 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |||||| || ||||| || | |||||| |||||||||||||| |
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| T |
28486358 |
aaaagatcatcaggaagttggtaaaatccaaatgcaaaatctcctgaaggagtgagccatcgtgttgtctcatttccagcagtaagtgactcaccaacac |
28486259 |
T |
|
| Q |
306 |
--acaatcacaccttgatccaatgattctaagctgcataa |
343 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |
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|
| T |
28486258 |
tcacactcacaccttgatccaatgattctaagctgcataa |
28486219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 60 - 304
Target Start/End: Complemental strand, 28436652 - 28436408
Alignment:
| Q |
60 |
ctccataactctaaaccttgagggttggtcagcaccaaaccatgagaatcatttaatatcaattttgatcccttaggagcagggttgtttccatttgcat |
159 |
Q |
| |
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||||||| ||||||||||||||||||||| |||| ||| ||||||||||||||||||| |||| |||||||||||||| ||||||||| |||||||||| |
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|
| T |
28436652 |
ctccatagctctaaaccttgagggttggtgagcatcaacccatgagaatcatttaataccaatgttgatcccttaggaacagggttgtcaccatttgcat |
28436553 |
T |
|
| Q |
160 |
accaaatgatggcatcatcttgtatcttgtcataccatatagctagcaagaaaagctcattaggaagttggtaaaatccaaatgaaaaatctcctgaagg |
259 |
Q |
| |
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|||||||||||| |||| |||||| ||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||| ||||| |
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| T |
28436552 |
accaaatgatggaatcagtttgtattttgacataccatatagctagcaagaaaagctgatttggaagttggtaaaatccaaatgcgaaatctcccgaagg |
28436453 |
T |
|
| Q |
260 |
agagagccaacgagttgtgccactgccagcaataagtgactcacc |
304 |
Q |
| |
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|||||||||||||||||| ||| | |||||| | ||||| ||||| |
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|
| T |
28436452 |
agagagccaacgagttgtcccatttccagcagtgagtgagtcacc |
28436408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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