View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18467_low_30 (Length: 349)
Name: NF18467_low_30
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18467_low_30 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 349
Target Start/End: Complemental strand, 32166945 - 32166615
Alignment:
| Q |
19 |
caagccgccactattcccttactctgcagctacaaagacgtcgcagtcgatgccgccaccggttccggtaaaaccctagctttcgtcattccacttgtcg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32166945 |
caagccgccactattcccttactctgcagctacaaagacgtcgcagtcgatgccgccacaggttccggtaaaaccctagctttcgtcattccacttgtcg |
32166846 |
T |
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| Q |
119 |
aaattcttcgccgcaacgcttccaatcccaaacctcaccaggttcctccctcaccccattccaattcaattaggttaattattgtaatgtgtccaatttt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32166845 |
aaattcttcgccgcaacgcttccaatcccaaacctcaccaggttccttcctctccccattccaattcaattaggttaattattgtgatgtgtccaatttt |
32166746 |
T |
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| Q |
219 |
gtgtgataatgaagtttttgtttatttttaggtgcttggagtgattatatctcctactagggaattagcgtcgcaaatatatcatgttgcacagcctttt |
318 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32166745 |
gtgtgataatgaagtttttgattatttttaggtgcttggagtgattatatctcctactagggaattagcgtcgcaaatatatcatgttgcacagcctttt |
32166646 |
T |
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| Q |
319 |
atttcgactttagctaatgttaaatcaatgc |
349 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
32166645 |
atttcgactttagctaatgttaaatcaatgc |
32166615 |
T |
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