View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18467_low_31 (Length: 346)
Name: NF18467_low_31
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18467_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 120377 - 120639
Alignment:
| Q |
17 |
atttttcgatcgttggataccgagttttaagaaaaaagaaaagaacctgatagtagtgagagaggtattagcacagtgaggacaattgaaaggagcagga |
116 |
Q |
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| T |
120377 |
atttttcgatcgttggataccgagttttaagaaaaaagaaaagaacctgatagtagtgagagaggtattagcacagtgaggacaattgaaaggagcagga |
120476 |
T |
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| Q |
117 |
gtgtctctgtaaatagtctgttgaataggaatacctttgggatctccgattatcgcgttaggagggataccgttcctttcatatactggaactccaaccg |
216 |
Q |
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| T |
120477 |
gtgtctctgtaaatagtctgttgaataggaatacctttgggatctccgattatcgcgttaggagggataccgttcctttcatatactggaactccaaccg |
120576 |
T |
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| Q |
217 |
ccactacttctttttcttcttttctccccatattctcaattcacagttcacgcaacacttttc |
279 |
Q |
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| T |
120577 |
ccattacttctttttcttcttttctccccatattctcaattcacagttcacgcaacacttttc |
120639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 339
Target Start/End: Original strand, 120659 - 120693
Alignment:
| Q |
305 |
cattcaattccatggaaacgcgtttctttcctttg |
339 |
Q |
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| T |
120659 |
cattcaattccatggaaacgcgtttctttcctttg |
120693 |
T |
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