View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18467_low_32 (Length: 327)
Name: NF18467_low_32
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18467_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 16917327 - 16917623
Alignment:
| Q |
18 |
cattattgtcgcaaactcattttaccagctaatatgaacatgttaacttcccttcgtgaagtgagtatcatgggtgcggataaaaggcgcaggttatata |
117 |
Q |
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| T |
16917327 |
cattattgtcccaaactcattttaccagctaatatgaacatgttaacttcccttcgtaaagtgactatcatgggtgcggataaaaggcgcaggttatata |
16917426 |
T |
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| Q |
118 |
acggcttagaacacattccgtcgctgcaaaatttgtctctgacagattttccttctcttagatctttgccagactggttgggaaacacgcctactcttca |
217 |
Q |
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| T |
16917427 |
acggcttagaacacattccctcgctggaaaatttgtctctgacagattttccttttcttagatctttgccagactggttgggaaacacgctatctcttca |
16917526 |
T |
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| Q |
218 |
ggaattagaaattagtaagtttcctatcttaaccgagttaccagacaactttgaccaacacaaaaacttgcagaaactaagtattgatagatgtcct |
314 |
Q |
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| T |
16917527 |
gaaattagaaattagtaagtttcctgtgttaacctcactaccagacaactttgagcaactcgaaaacttgcagaaactaagtattgatagatgtcct |
16917623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 315
Target Start/End: Original strand, 16912144 - 16912438
Alignment:
| Q |
21 |
tattgtcgcaaactcattttaccagctaatatgaacatgttaacttcccttcgtgaagtgagtatcatgggtgcggataaaaggcgcaggttatataacg |
120 |
Q |
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| T |
16912144 |
tattgtcccgaactcattttaccagctaatatgaacatgttaaattcccttcgtgaagtgagtatcatgggtggggatagaaggcgcgggatatataacg |
16912243 |
T |
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| Q |
121 |
gcttagaacacattccgtcgctgcaaaatttgtctctgacagattttccttctcttagatctttgccagactggttgggaaacacgcctactcttcagga |
220 |
Q |
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| T |
16912244 |
gcttagaagacattcccttgctgcaaaatttgtctctgagagattttccttctcttagatctttgccagactggttgggagacacgctatctcttcagga |
16912343 |
T |
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| Q |
221 |
attagaaattagtaagtttcctatcttaaccgagttaccagacaactttgaccaacacaaaaacttgcagaaactaagtattgatagatgtccta |
315 |
Q |
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| T |
16912344 |
attagaaattagtaagtttcctaagttaacctcgttaccagacaactttgaccaactcgaaaacttgcagaaactatgtattgatagatgtccta |
16912438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 16836779 - 16836728
Alignment:
| Q |
37 |
ttttaccagctaatatgaacatgttaacttcccttcgtgaagtgagtatcat |
88 |
Q |
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| T |
16836779 |
ttttaccagctaatatgaacatgctaagttcccttcgtgaagtgagaatcat |
16836728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 16841890 - 16841845
Alignment:
| Q |
37 |
ttttaccagctaatatgaacatgttaacttcccttcgtgaagtgag |
82 |
Q |
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| T |
16841890 |
ttttaccagctaatatgaacatgctaagttcccttcgtgaagtgag |
16841845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 13376036 - 13375982
Alignment:
| Q |
145 |
aaaatttgtctctgacagattttccttctcttagatctttgccagactggttggg |
199 |
Q |
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| T |
13376036 |
aaaatttgtctctaactaattttccttctctaacatccttgccagactggttggg |
13375982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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