View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18467_low_4 (Length: 598)

Name: NF18467_low_4
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18467_low_4
NF18467_low_4
[»] chr7 (7 HSPs)
chr7 (20-393)||(35629156-35629530)
chr7 (20-362)||(35635576-35635918)
chr7 (438-583)||(35629575-35629722)
chr7 (438-581)||(35635993-35636136)
chr7 (438-583)||(35632731-35632876)
chr7 (36-178)||(35632337-35632479)
chr7 (102-178)||(35634252-35634328)
[»] chr3 (7 HSPs)
chr3 (449-583)||(10299123-10299257)
chr3 (449-583)||(10319555-10319689)
chr3 (449-583)||(10336671-10336805)
chr3 (31-350)||(10299366-10299685)
chr3 (31-350)||(10319798-10320117)
chr3 (31-350)||(10336914-10337233)
chr3 (449-547)||(10338459-10338557)


Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 20 - 393
Target Start/End: Original strand, 35629156 - 35629530
Alignment:
Q  20 tgcagccaatgagtggttaatccagaccgtgcaaaagcagatggtgtaggtctgtcagatgagcttttgtaggacaaattatgtatgggcatcctcagaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35629156 tgcagccaatgagtggttaatccagaccgtgcaaaagcagatggtgtaggtctgtcagatgagcttttgtaggacaaattatgtacgggcatcctcagaa 35629255  T
Q  120 aagacgttttgtcaaagaacacaacaatcacacttatatcatcatgaaaagacctcctgttcccattgccacgtcccagattagcatgcatcatgttatt 219  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  35629256 acgacgttttgtcaaagaacacaacaatcacacttatatcatcatgaaaagacctcctgttcccatcgccacgtcccagattagcatgcatcatgctatt 35629355  T
Q  220 acaggtaacattcccattagcagccgcttccactagaacagtactcacaagcctttttgcaattccctgcaaaatccaccaaagc--ataactaaatcaa 317  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  35629356 acaggtaacattcccattagcagccgctttcgctagaacagtactcacaagcctttttgcaattccctgcaaaatccaccaaagcatataactaaatcaa 35629455  T
Q  318 aagccagcaaacataacggtaatgactcaaattcgtctttgatgcnnnnnnncacaaatacttattttcattttat 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  35629456 aagccagcaaacataacggtaatgactcaaattcgtctttgatgc-aaaaaacacaaatacttattttcattttat 35629530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 20 - 362
Target Start/End: Original strand, 35635576 - 35635918
Alignment:
Q  20 tgcagccaatgagtggttaatccagaccgtgcaaaagcagatggtgtaggtctgtcagatgagcttttgtaggacaaattatgtatgggcatcctcagaa 119  Q
    ||||||| |||  ||||||||||||||  ||||||||| |||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  35635576 tgcagcccatgcatggttaatccagactctgcaaaagctgatgttgtaggtctggcagatgagcttttgtaggacaaattatgtaggggcatcctcagaa 35635675  T
Q  120 aagacgttttgtcaaagaacacaacaatcacacttatatcatcatgaaaagacctcctgttcccattgccacgtcccagattagcatgcatcatgttatt 219  Q
      ||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| | ||||| ||||    
T  35635676 tcgactttttgtccaagaacacaacaatcacacttatatcatcatgaaaatacctcctgttcccatcgccacgtcccagattagcattcttcatggtatt 35635775  T
Q  220 acaggtaacattcccattagcagccgcttccactagaacagtactcacaagcctttttgcaattccctgcaaaatccaccaaagcataactaaatcaaaa 319  Q
    | |||||  ||||| ||||||||||||||   ||||||||||||||||||||||||||||||||||||| ||||  ||||| ||||||||||||||||||    
T  35635776 ataggtagaattcctattagcagccgcttgtgctagaacagtactcacaagcctttttgcaattccctgaaaaaatcaccatagcataactaaatcaaaa 35635875  T
Q  320 gccagcaaacataacggtaatgactcaaattcgtctttgatgc 362  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  35635876 gccagcaaacataacagtaatgactcaaattcgtctttgatgc 35635918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 438 - 583
Target Start/End: Original strand, 35629575 - 35629722
Alignment:
Q  438 tcatagaaatcgatat--atacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaa 535  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35629575 tcatagaaatcgatatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaa 35629674  T
Q  536 atataagaaactcgtcactatatgttaaaactctagtacgcatctctg 583  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  35629675 atataagaaacttgtcactatatgttaaaactctagtacgcatctctg 35629722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 438 - 581
Target Start/End: Original strand, 35635993 - 35636136
Alignment:
Q  438 tcatagaaatcgatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaat 537  Q
    ||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35635993 tcatagaaatcgatatacacatatatttcttgaattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaat 35636092  T
Q  538 ataagaaactcgtcactatatgttaaaactctagtacgcatctc 581  Q
    || |||||||  ||  | | ||||||| |||||| |||||||||    
T  35636093 atcagaaacttatcgttctctgttaaatctctagaacgcatctc 35636136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 438 - 583
Target Start/End: Original strand, 35632731 - 35632876
Alignment:
Q  438 tcatagaaatcgatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaat 537  Q
    ||||||| || ||||||||| ||||||||||||||| ||||||||||||||| ||||||| |||||||||||||| |||||||||||| |||| ||||||    
T  35632731 tcatagatatggatatatacatacatttcttggattcttttgaacaatttcagctgcttgctcatttgacaagaactcccaaagtccaacagacgcaaat 35632830  T
Q  538 ataagaaactcgtcactatatgttaaaactctagtacgcatctctg 583  Q
    ||||||||||  ||| | | ||||||||||||||||  ||||||||    
T  35632831 ataagaaacttatcattctctgttaaaactctagtaaacatctctg 35632876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 36 - 178
Target Start/End: Original strand, 35632337 - 35632479
Alignment:
Q  36 ttaatccagaccgtgcaaaagcagatggtgtaggtctgtcagatgagcttttgtaggacaaattatgtatgggcatcctcagaaaagacgttttgtcaaa 135  Q
    |||||||||||||||||||| |||||||   |||  ||||| |||||| | |||||||||||||||||| | ||  |||||||||  || ||||| | ||    
T  35632337 ttaatccagaccgtgcaaaatcagatggcagaggcgtgtcaaatgagcatatgtaggacaaattatgtacgcgccgcctcagaaacaactttttggccaa 35632436  T
Q  136 gaacacaacaatcacacttatatcatcatgaaaagacctcctg 178  Q
    ||||| |||||| ||||||||||||||||||||||||||||||    
T  35632437 gaacaaaacaatgacacttatatcatcatgaaaagacctcctg 35632479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 35634252 - 35634328
Alignment:
Q  102 gtatgggcatcctcagaaaagacgttttgtcaaagaacacaacaatcacacttatatcatcatgaaaagacctcctg 178  Q
    ||||| || |||||||||| ||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35634252 gtatgcgcctcctcagaaacgaatttttgtcaaagaacacaacaatcacacttatatcatcacgaaaagacctcctg 35634328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 5e-39; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 449 - 583
Target Start/End: Complemental strand, 10299257 - 10299123
Alignment:
Q  449 gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactc 548  Q
    ||||||||| ||||||||| ||||| ||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||| |||||     
T  10299257 gatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactt 10299158  T
Q  549 gtcactatatgttaaaactctagtacgcatctctg 583  Q
     ||| ||| |||||||||||||||| |||||||||    
T  10299157 atcattatctgttaaaactctagtatgcatctctg 10299123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 449 - 583
Target Start/End: Complemental strand, 10319689 - 10319555
Alignment:
Q  449 gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactc 548  Q
    ||||||||| ||||||||| ||||| ||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||| |||||     
T  10319689 gatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactg 10319590  T
Q  549 gtcactatatgttaaaactctagtacgcatctctg 583  Q
     ||| ||| |||||||||||||||| |||||||||    
T  10319589 atcattatctgttaaaactctagtatgcatctctg 10319555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 449 - 583
Target Start/End: Complemental strand, 10336805 - 10336671
Alignment:
Q  449 gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactc 548  Q
    ||||||||| ||||||||| ||||| ||| ||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||| |||||     
T  10336805 gatatatacatacatttctaggattctttcgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactg 10336706  T
Q  549 gtcactatatgttaaaactctagtacgcatctctg 583  Q
     ||| ||| |||||||||||||||| |||||||||    
T  10336705 atcattatctgttaaaactctagtatgcatctctg 10336671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 31 - 350
Target Start/End: Complemental strand, 10299685 - 10299366
Alignment:
Q  31 agtggttaatccagaccgtgcaaaagcagatggtgtaggtctgtcagatgagcttttgtaggacaaattatgtatgggcatcctcagaaaagacgttttg 130  Q
    ||||||||||||| |  |||||||| | ||| ||  |||  |||||||||||| | |||||||||||||| |||  |||  |||| |||| |||||||||    
T  10299685 agtggttaatccaaattgtgcaaaatctgattgtacaggcatgtcagatgagcctgtgtaggacaaattaagtacaggctgcctcggaaacgacgttttg 10299586  T
Q  131 tcaaagaacacaacaatcacacttatatcatcatgaaaagacctcctgttcccattgccacgtcccagattagcatgcatcatgttattacaggtaacat 230  Q
    || |||||||| |||||||||||||||||||||||||||||||||| | || |||||   ||||||  |  |||   |   || ||  || ||||||| |    
T  10299585 tccaagaacaccacaatcacacttatatcatcatgaaaagacctccggctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaacct 10299486  T
Q  231 tcccattagcagccgcttccactagaacagtactcacaagcctttttgcaattccctgcaaaatccaccaaagcataactaaatcaaaagccagcaaaca 330  Q
    |||   |   ||| ||| || ||||| | ||||||| ||||||||||||||||||||||||||||||||| || |||| ||||| ||||||| ||||| |    
T  10299485 tccttcttttagcagctaccgctagagcggtactcagaagcctttttgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaata 10299386  T
Q  331 taacggtaatgactcaaatt 350  Q
    |||| |||| ||||||||||    
T  10299385 taactgtaaagactcaaatt 10299366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 31 - 350
Target Start/End: Complemental strand, 10320117 - 10319798
Alignment:
Q  31 agtggttaatccagaccgtgcaaaagcagatggtgtaggtctgtcagatgagcttttgtaggacaaattatgtatgggcatcctcagaaaagacgttttg 130  Q
    ||||||||||||| |  |||||||| | ||| ||  ||| ||||||||||||| | |||||||||||||| |||  |||  |||| |||| |||||||||    
T  10320117 agtggttaatccaaattgtgcaaaatctgattgtacaggcctgtcagatgagcctgtgtaggacaaattaagtacaggctgcctcggaaacgacgttttg 10320018  T
Q  131 tcaaagaacacaacaatcacacttatatcatcatgaaaagacctcctgttcccattgccacgtcccagattagcatgcatcatgttattacaggtaacat 230  Q
    || |||||||| |||||||||||||||||||||||||||||||||| | || |||||   ||||||  |  |||   |   || ||  || ||||||| |    
T  10320017 tccaagaacaccacaatcacacttatatcatcatgaaaagacctccggctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaacct 10319918  T
Q  231 tcccattagcagccgcttccactagaacagtactcacaagcctttttgcaattccctgcaaaatccaccaaagcataactaaatcaaaagccagcaaaca 330  Q
    |||   |   ||| ||| || ||||| | ||||||| ||||||||| ||||||||||||||||||||||| || |||| ||||| ||||||| ||||| |    
T  10319917 tccttcttttagcagctaccgctagagcggtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaata 10319818  T
Q  331 taacggtaatgactcaaatt 350  Q
    |||| |||| ||||||||||    
T  10319817 taactgtaaagactcaaatt 10319798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 31 - 350
Target Start/End: Complemental strand, 10337233 - 10336914
Alignment:
Q  31 agtggttaatccagaccgtgcaaaagcagatggtgtaggtctgtcagatgagcttttgtaggacaaattatgtatgggcatcctcagaaaagacgttttg 130  Q
    ||||||||||||| |  |||||||| | ||| ||  ||| ||||||||||||| | |||||||||||||| |||  |||  |||| |||| |||||||||    
T  10337233 agtggttaatccaaattgtgcaaaatctgattgtacaggcctgtcagatgagcctgtgtaggacaaattaagtacaggctgcctcggaaacgacgttttg 10337134  T
Q  131 tcaaagaacacaacaatcacacttatatcatcatgaaaagacctcctgttcccattgccacgtcccagattagcatgcatcatgttattacaggtaacat 230  Q
    || |||||||| |||||||||||||||||||||||||||||||||| | || |||||   ||||||  |  |||   |   || ||  || ||||||| |    
T  10337133 tccaagaacaccacaatcacacttatatcatcatgaaaagacctccggctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaacct 10337034  T
Q  231 tcccattagcagccgcttccactagaacagtactcacaagcctttttgcaattccctgcaaaatccaccaaagcataactaaatcaaaagccagcaaaca 330  Q
    |||   |   ||| ||| || ||||| | ||||||| ||||||||| ||||||||||||||||||||||| || |||| ||||| ||||||| ||||| |    
T  10337033 tccttcttttagcagctaccgctagagcggtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaata 10336934  T
Q  331 taacggtaatgactcaaatt 350  Q
    |||| |||| ||||||||||    
T  10336933 taactgtaaagactcaaatt 10336914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 449 - 547
Target Start/End: Complemental strand, 10338557 - 10338459
Alignment:
Q  449 gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaact 547  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||| | |||||||||||||| |||||||||||| |||| ||||||||| ||||||    
T  10338557 gatatatacatacatttcttggattcttttgaacaatttcaactgctagctcatttgacaagaactcccaaagtccaacagaggcaaatatatgaaact 10338459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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