View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18467_low_40 (Length: 265)
Name: NF18467_low_40
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18467_low_40 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 26735223 - 26735341
Alignment:
| Q |
22 |
taacaagccttcattatggaggcatcaaaattatatatctaggttatgttcctttttatatgttttcattttcgcatcaagtagtgcgcatctttaagca |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26735223 |
taacaagccttcattatggaggcatcaaaattatatatctaggttatgttcctttttatatgttttcattttcgcatcaagtagtgcgcatc-ttaagca |
26735321 |
T |
|
| Q |
122 |
tgccatccgtgacctgaaca |
141 |
Q |
| |
|
|| ||||| ||||||||||| |
|
|
| T |
26735322 |
tgtcatccatgacctgaaca |
26735341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 139 - 242
Target Start/End: Original strand, 26735415 - 26735518
Alignment:
| Q |
139 |
acatgaatgtgaaatcttttcagatggaaataatttctctgtttacatgtatgaatatataattaacaattcgtcttgcaaatcctcttaaatcctttca |
238 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26735415 |
acatgaacgtgaaatcttttcagatggaaataatttctctgtttacatgtatgaatatataattaacaattcgtcttgcaaatcctcttaaatcctttca |
26735514 |
T |
|
| Q |
239 |
atca |
242 |
Q |
| |
|
|||| |
|
|
| T |
26735515 |
atca |
26735518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 41573873 - 41573942
Alignment:
| Q |
29 |
ccttcattatggaggcatc-aaaat-tatatatctaggttatgttcctttttatatgttttcattttcgca |
97 |
Q |
| |
|
||||||||| |||||||| ||||| |||||||||||||| ||||||||||||| ||||| |||||||||| |
|
|
| T |
41573873 |
ccttcattacagaggcatccaaaatatatatatctaggttctgttcctttttat-tgtttccattttcgca |
41573942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 897947 - 898023
Alignment:
| Q |
22 |
taacaagccttcattatggaggcatcaaaattatatatctaggttatgttccttttta-tatgttttcattttcgca |
97 |
Q |
| |
|
||||||||||||||||||||| ||||| || |||||||||||||| |||||||| ||| |||||||||||||||||| |
|
|
| T |
897947 |
taacaagccttcattatggagacatcagaactatatatctaggttttgttccttcttattatgttttcattttcgca |
898023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 25906332 - 25906259
Alignment:
| Q |
149 |
gaaatcttttcagatggaaataatttct--ctgtttacatgtatgaatatataattaacaattcgtcttgcaaatcct |
224 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||| || ||||| ||||||||||| |||||||||| |
|
|
| T |
25906332 |
gaaaccttttcagatggaaataatttctcactgtttacatgtaaga----ataatcaacaattcgtcctgcaaatcct |
25906259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 5650541 - 5650472
Alignment:
| Q |
29 |
ccttcattatggaggcatcaaaattatatatctaggttatgttcctttttat-atgttttcattttcgca |
97 |
Q |
| |
|
|||||||||||||| ||||||| | |||||||| ||| |||||||| |||| |||| |||||||||||| |
|
|
| T |
5650541 |
ccttcattatggagacatcaaatctctatatctaagttttgttccttcttatcatgtattcattttcgca |
5650472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 40424610 - 40424683
Alignment:
| Q |
149 |
gaaatcttttcagatggaaataatttct--ctgtttacatgtatgaatatataattaacaattcgtcttgcaaatcct |
224 |
Q |
| |
|
|||| |||||||||| |||||||||||| ||||||||||||| || ||||| ||||||||||| |||||||||| |
|
|
| T |
40424610 |
gaaaccttttcagatagaaataatttctcactgtttacatgtaaga----ataatcaacaattcgtcctgcaaatcct |
40424683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University