View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18467_low_44 (Length: 249)
Name: NF18467_low_44
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18467_low_44 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 108 - 249
Target Start/End: Original strand, 38341522 - 38341663
Alignment:
| Q |
108 |
agccactgatttcttctttgaactcgtcgatgctcttttcttattgaatgaataatccacttcgtcctcatcatcgttttcttcaagtacatctccatca |
207 |
Q |
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| T |
38341522 |
agccactgatttcttctttgaactcgtcgatgctcttttcatattgaatgaataatccacttcgtcctcatcatcgttttcttcaagtacatctccatca |
38341621 |
T |
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| Q |
208 |
aactcataaggagggtcgaggacatcatcaacctcaacagcc |
249 |
Q |
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| T |
38341622 |
aactcataaggagggtcgaggacatcatcaacctcaacagcc |
38341663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 108 - 237
Target Start/End: Original strand, 38333769 - 38333898
Alignment:
| Q |
108 |
agccactgatttcttctttgaactcgtcgatgctcttttcttattgaatgaataatccacttcgtcctcatcatcgttttcttcaagtacatctccatca |
207 |
Q |
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| T |
38333769 |
agccactgatttcttctttgaacttgttgatgcgcttgtcttcttggatgaataatccacgtcgtcatcatcgtcattttcttcaagttcatctccatca |
38333868 |
T |
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| Q |
208 |
aactcataaggagggtcgaggacatcatca |
237 |
Q |
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| T |
38333869 |
ataacataaggagggtcgaggacatcatca |
38333898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 38341427 - 38341488
Alignment:
| Q |
13 |
gagatgaatgcgggaactttttaggaggttcttcagtacccttttctaaatcatcattagcc |
74 |
Q |
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| T |
38341427 |
gagatgaatgcgggaactttttaggaggttcttcagtacccttttctaaatcatcattagcc |
38341488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 38333675 - 38333736
Alignment:
| Q |
13 |
gagatgaatgcgggaactttttaggaggttcttcagtacccttttctaaatcatcattagcc |
74 |
Q |
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| T |
38333675 |
gagatgcatgggggaactttttaggaggttcttcagtaaccttttctgaatcatcattagcc |
38333736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 193
Target Start/End: Complemental strand, 25379419 - 25379342
Alignment:
| Q |
116 |
atttcttctttgaactcgtcgatgctcttttcttattgaatgaataatccacttcgtcctcatcatcgttttcttcaa |
193 |
Q |
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| T |
25379419 |
atttcttttttgaatttgttaatgctcttttcttcttagatgaattatccacttcgtcctcgtcatcattttcttcaa |
25379342 |
T |
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