View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18467_low_46 (Length: 238)
Name: NF18467_low_46
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18467_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 34488451 - 34488670
Alignment:
| Q |
1 |
ccaccacctgggctgcatcaagcaaccaaaattccatctgcaccctaaccagttttcgtgtctcctccacctgctcctcattccgagacaagttcatcta |
100 |
Q |
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| T |
34488451 |
ccaccacctgagctgcatcaagcaaccaaaattccatctgcaccctaaccagtttttgtgtctcctctacctgctccccattccgagacaagttcatcta |
34488550 |
T |
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| Q |
101 |
cccaccagaagtgtctgaatttgattaggatctgaggcaaattcatcgtcccaaccaccataaccatcgttttccccttcttgatgtccaacacctctat |
200 |
Q |
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| T |
34488551 |
cccaccagaagtgtctgaatttgagtaggatctaaggcaaattcatcgtcccaaccaccataaccatcgttttccccttcttgatgtccaacacctctat |
34488650 |
T |
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| Q |
201 |
agtttgctgttgaggtggtg |
220 |
Q |
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|||||||||||||||||||| |
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| T |
34488651 |
agtttgctgttgaggtggtg |
34488670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 27629970 - 27630159
Alignment:
| Q |
12 |
gctgcatcaagcaaccaaaattccatctgcaccctaaccagttttcgtgtctcctccacctgctcctcattccgagacaagttcatctacccaccagaag |
111 |
Q |
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| T |
27629970 |
gctgcatcaagcaacctaagttccatctgcaccctaaccagttttcgtgtctcctccacctgctctccaatccgagacaagttcatctacccaccagaaa |
27630069 |
T |
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| Q |
112 |
tgtctgaatttgattaggatctgaggcaaattcatcgtcccaaccaccataaccatcgttttccccttcttgatgtccaacacctctata |
201 |
Q |
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| T |
27630070 |
tgtctgaatttgaataggatctgaggcaaattcatcatcccaaccaccataaccatcattttccccttcttgatgtccaacacctctata |
27630159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 34522658 - 34522811
Alignment:
| Q |
1 |
ccaccacctgggctgcatcaagcaaccaaaattccatctgcaccctaaccagttttcgtgtctcctccacctgctcctcattccgagacaagttcatcta |
100 |
Q |
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|||||||||| |||||||||||||||| || || ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34522658 |
ccaccacctgagctgcatcaagcaacctaagtttcatctgccccctaaccagttttcgtgtctcctccacctgctccccattccgagacaagttcatcta |
34522757 |
T |
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| Q |
101 |
cccaccagaagtgtctgaatttgattaggatctgaggcaaattcatcgtcccaa |
154 |
Q |
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| T |
34522758 |
cacaccagaagtgtttgaatttgaataggatctgaggcaaattcatcgtcccaa |
34522811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 34488321 - 34488237
Alignment:
| Q |
12 |
gctgcatcaagcaaccaaaattccatctgcaccctaaccagttttcgtgtctcctccacctgctcctcattccgagacaagttcat |
97 |
Q |
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| T |
34488321 |
gctgcatcaagcaacctaagttccatctacagcctatcaagttttcgtgtctcctccacct-ctccccaatctgaggcaagttcat |
34488237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 34510123 - 34510173
Alignment:
| Q |
97 |
tctacccaccagaagtgtctgaatttgattaggatctgaggcaaattcatc |
147 |
Q |
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|||| |||||||||||||||||| |||| ||| ||||||||||| |||||| |
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| T |
34510123 |
tctagccaccagaagtgtctgaagttgaatagtatctgaggcaagttcatc |
34510173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 27629827 - 27629743
Alignment:
| Q |
12 |
gctgcatcaagcaaccaaaattccatctgcaccctaaccagttttcgtgtctcctccacctgctcctcattccgagacaagttcat |
97 |
Q |
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|||| ||||||||||| || |||||||| || |||| |||||||||||||||||||||| |||| || || ||| ||||||||| |
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| T |
27629827 |
gctggatcaagcaacctaagttccatctacagcctatgaagttttcgtgtctcctccacct-ctccccaatctgaggcaagttcat |
27629743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 34522528 - 34522444
Alignment:
| Q |
12 |
gctgcatcaagcaaccaaaattccatctgcaccctaaccagttttcgtgtctcctccacctgctcctcattccgagacaagttcat |
97 |
Q |
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|||||||||||||||| | |||||||| || |||| | |||||||||||||||| ||||| |||| || || ||| ||||||||| |
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| T |
34522528 |
gctgcatcaagcaacctcagttccatctacatcctatcaagttttcgtgtctccttcacct-ctccccaatctgaggcaagttcat |
34522444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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