View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18467_low_47 (Length: 237)
Name: NF18467_low_47
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18467_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 20157729 - 20157509
Alignment:
| Q |
1 |
aaaaggtcattattgttgaaagaatgccttaacaattctgtaatttgatggctctgatgttaaannnnnnngttcgaaaaatgcataaaagttatacagg |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20157729 |
aaaaggtcattattgttgaaagaacgccttaacaattctgtaatttgatggctctgatgttaaatttttttgttcgaaaaatgcataaaagttatacagg |
20157630 |
T |
|
| Q |
101 |
tattttaatttttaaaatgatagcatggagttaaagaatgtatagtaatcaaataccttttcttctttttgtaggtgctgggcgaggtagaggttgatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20157629 |
tattttaatttttaaaatgatagcatggagttaaagaatgtatagtaatcaaataccttttcttctttttgtaggtgctgggcgaggtagaggttgatct |
20157530 |
T |
|
| Q |
201 |
atgcaaatgatatgaagtgtg |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
20157529 |
atgcaaatgatatgaagtgtg |
20157509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 20199741 - 20199961
Alignment:
| Q |
1 |
aaaaggtcattattgttgaaagaatgccttaacaattctgtaatttgatggctctgatgttaaannnnnnngttcgaaaaatgcataaaagttatacagg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20199741 |
aaaaggtcattattgttgaaagaacgccttaacaattctgtaatttgatggctctgatgttaaatttttttgttcgaaaaatgcataaaagttatacagg |
20199840 |
T |
|
| Q |
101 |
tattttaatttttaaaatgatagcatggagttaaagaatgtatagtaatcaaataccttttcttctttttgtaggtgctgggcgaggtagaggttgatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20199841 |
tattttaatttttaaaatgatagcatggagttaaagaatgtatagtaatcaaataccttttcttctttttgtaggtgctgggcgaggtagaggttgatct |
20199940 |
T |
|
| Q |
201 |
atgcaaatgatatgaagtgtg |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
20199941 |
atgcaaatgatatgaagtgtg |
20199961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 38226695 - 38226475
Alignment:
| Q |
1 |
aaaaggtcattattgttgaaagaatgccttaacaattctgtaatttgatggctctgatgttaaannnnnnngttcgaaaaatgcataaaagttatacagg |
100 |
Q |
| |
|
||||||| |||||||||||||||| | |||| ||||||| |||| ||| || ||| |||||||| ||||||||||||||||||| ||||| | | |
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|
| T |
38226695 |
aaaaggttattattgttgaaagaacgtcttaccaattctttaatgtgacggttctaatgttaaattttattgttcgaaaaatgcataaaaattatatatg |
38226596 |
T |
|
| Q |
101 |
tattttaatttttaaaatgatagcatggagttaaagaatgtatagtaatcaaataccttttcttctttttgtaggtgctgggcgaggtagaggttgatct |
200 |
Q |
| |
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| ||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||| |
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| T |
38226595 |
ttttttaatttttgaaatgatagcttgaagttaaagaatgtatagtaatcaaataccttttcttcttttggtaggtgctgggcggggtagaggatgatct |
38226496 |
T |
|
| Q |
201 |
atgcaaatgatatgaagtgtg |
221 |
Q |
| |
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| ||||||||||||||||||| |
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| T |
38226495 |
aagcaaatgatatgaagtgtg |
38226475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 44284253 - 44284473
Alignment:
| Q |
1 |
aaaaggtcattattgttgaaagaatgccttaacaattctgtaatttgatggctctgatgttaaannnnnnngttcgaaaaatgcataaaagttatacagg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
44284253 |
aaaaggtcattattgttgaaagaacgccttaacaattctgtaatttgatggctctgatgttaaatttttttgttcgaaaaatgcataaaagttatacagg |
44284352 |
T |
|
| Q |
101 |
tattttaatttttaaaatgatagcatggagttaaagaatgtatagtaatcaaataccttttcttctttttgtaggtgctgggcgaggtagaggttgatct |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44284353 |
tattttaatttttaaaatgatagcatggagttaaagaatgtatagtaatcaaataccttttcttctttttgtaggtgctgggcgaggtagaggttgatct |
44284452 |
T |
|
| Q |
201 |
atgcaaatgatatgaagtgtg |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
44284453 |
atgcaaatgatatgaagtgtg |
44284473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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