View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18467_low_53 (Length: 201)

Name: NF18467_low_53
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18467_low_53
NF18467_low_53
[»] chr1 (2 HSPs)
chr1 (14-134)||(48950127-48950247)
chr1 (135-201)||(48950273-48950339)
[»] chr4 (2 HSPs)
chr4 (14-134)||(51262683-51262803)
chr4 (135-201)||(51262829-51262895)
[»] scaffold0050 (1 HSPs)
scaffold0050 (14-131)||(14193-14310)
[»] chr8 (4 HSPs)
chr8 (14-127)||(43321229-43321342)
chr8 (14-130)||(7124057-7124173)
chr8 (135-201)||(7123961-7124027)
chr8 (135-192)||(43321375-43321432)
[»] chr2 (2 HSPs)
chr2 (16-127)||(27265449-27265560)
chr2 (158-200)||(27265381-27265423)


Alignment Details
Target: chr1 (Bit Score: 121; Significance: 3e-62; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 48950127 - 48950247
Alignment:
Q  14 atcaagaagtattggagtgtgatcagagtgggaagtaagcaagtttgtaagtttgacttctggaaaacgttggagccattcggagtttcccatagccata 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48950127 atcaagaagtattggagtgtgatcagagtgggaagtaagcaagtttgtaagtttgacttctggaaaacgttggagccattcggagtttcccatagccata 48950226  T
Q  114 tccaatctttcttctagtact 134  Q
    |||||||||||||||||||||    
T  48950227 tccaatctttcttctagtact 48950247  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 48950273 - 48950339
Alignment:
Q  135 acgtaaatgggtgaccatgcaatttaatatcggataaggcacaatcatcaaccgcttcacggaaacc 201  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  48950273 acgtaaatgagtgaccatgcaatttaatatcggataaggcacaatcatcaaccacttcacggaaacc 48950339  T

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Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 51262683 - 51262803
Alignment:
Q  14 atcaagaagtattggagtgtgatcagagtgggaagtaagcaagtttgtaagtttgacttctggaaaacgttggagccattcggagtttcccatagccata 113  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||| |||||    
T  51262683 atcaagaagtattgaagtgtgatcagagtgggaagtaagcaagtttgtaagtttgacttttggaaaacgttgtagccattctgagtttcccataaccata 51262782  T
Q  114 tccaatctttcttctagtact 134  Q
    |||||||||||||||||||||    
T  51262783 tccaatctttcttctagtact 51262803  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 51262829 - 51262895
Alignment:
Q  135 acgtaaatgggtgaccatgcaatttaatatcggataaggcacaatcatcaaccgcttcacggaaacc 201  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51262829 acgtaaatgggtgacggtgcaatttaatatcggataaggcacaatcatcaaccgcttcacggaaacc 51262895  T

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Target: scaffold0050 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 14310 - 14193
Alignment:
Q  14 atcaagaagtattggagtgtgatcagagtgggaagtaagcaagtttgtaagtttgacttctggaaaacgttggagccattcggagtttcccatagccata 113  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||    
T  14310 atcaagcaatattggagtgtgatcagagtgggaagtaagcaagtttgtaagtttgacttctggaaaacattgcagccattcagagtttcccatagccata 14211  T
Q  114 tccaatctttcttctagt 131  Q
    ||||||||||||||||||    
T  14210 tccaatctttcttctagt 14193  T

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Target: chr8 (Bit Score: 82; Significance: 6e-39; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 43321229 - 43321342
Alignment:
Q  14 atcaagaagtattggagtgtgatcagagtgggaagtaagcaagtttgtaagtttgacttctggaaaacgttggagccattcggagtttcccatagccata 113  Q
    |||||| ||||||||||||||||| || || |||||||||| |||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||    
T  43321229 atcaagtagtattggagtgtgatctgaatgagaagtaagcaggtttgtaagtttgacttctggaaaacgttgcagccattcagggtttcccatagccata 43321328  T
Q  114 tccaatctttcttc 127  Q
    ||||||||||||||    
T  43321329 tccaatctttcttc 43321342  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 7124173 - 7124057
Alignment:
Q  14 atcaagaagtattggagtgtgatcagagtgggaagtaagcaagtttgtaagtttgacttctggaaaacgttggagccattcggagtttcccatagccata 113  Q
    |||||| | ||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| | ||  |||||||| ||||||||||||||||||    
T  7124173 atcaagcaatattggagtgtgatctgagtggaaagtaagcaggtttgtaagtttgacttctggaaagcatttcagccattcagagtttcccatagccata 7124074  T
Q  114 tccaatctttcttctag 130  Q
    |||||| ||||||||||    
T  7124073 tccaatatttcttctag 7124057  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 7124027 - 7123961
Alignment:
Q  135 acgtaaatgggtgaccatgcaatttaatatcggataaggcacaatcatcaaccgcttcacggaaacc 201  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||    
T  7124027 acgtaaatgggtgaccatgcaatttaatatcagatacggcacaatcatcaaccgcttcacgaaaacc 7123961  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 43321375 - 43321432
Alignment:
Q  135 acgtaaatgggtgaccatgcaatttaatatcggataaggcacaatcatcaaccgcttc 192  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||    
T  43321375 acgtaaatgggtgaccatccaatttaatatcagataatgcacaatcatcaaccgcttc 43321432  T

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Target: chr2 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 27265560 - 27265449
Alignment:
Q  16 caagaagtattggagtgtgatcagagtgggaagtaagcaagtttgtaagtttgacttctggaaaacgttggagccattcggagtttcccatagccatatc 115  Q
    |||| |||||| |||||||||| ||||| |||| |||||||||||||||||||||||||| ||||||||| | ||||||| |||||||||||||||||||    
T  27265560 caagcagtattagagtgtgatctgagtgagaagcaagcaagtttgtaagtttgacttctgaaaaacgttgcatccattcgaagtttcccatagccatatc 27265461  T
Q  116 caatctttcttc 127  Q
    |||| |||||||    
T  27265460 caatatttcttc 27265449  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 27265423 - 27265381
Alignment:
Q  158 ttaatatcggataaggcacaatcatcaaccgcttcacggaaac 200  Q
    |||||||| |||||||||||||||||||  |||||||||||||    
T  27265423 ttaatatcagataaggcacaatcatcaattgcttcacggaaac 27265381  T

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