View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18467_low_6 (Length: 571)
Name: NF18467_low_6
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18467_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 208 - 547
Target Start/End: Original strand, 39370424 - 39370763
Alignment:
| Q |
208 |
aaaattgcaaaccccctcaagatacacaattatccaagctcccaatgcaccaaaatagactagagttgttgtggtgaagaaaactcagtatgactccata |
307 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39370424 |
aaaattgcaaaccccatcaagatacacaattatccaagctcccaatgcaccaaaatagactagagttgttgtggtgaagaaaactcagtatgactccata |
39370523 |
T |
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| Q |
308 |
tttatattaactctctacttttgtttcttccaactattctcatgaatcataacaaatcacatctacagaatgaactctcttcaacttttctgtcttctcc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39370524 |
tttatattaactctctacttttgtttcttccaactattctcatgaatcataacaaatcacatctacagaatgaactctcttcaacttttctgtcttctcc |
39370623 |
T |
|
| Q |
408 |
tatagacttcgcaaactctccacagtaatggcactaaacattactcatatattttggttgaaatcttctaccatgttgatcaccataattctttccttgc |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39370624 |
tatagacttcgcaaactctccacagtaatggcactaaacattactcatatattttggttgaaatcttctaccatgttgatcaccataattctttccttgc |
39370723 |
T |
|
| Q |
508 |
ccacctttagttactagtgcattataaaccatatccatca |
547 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
39370724 |
ccacctttagttactagtgcattataaaccatatccatca |
39370763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 39370264 - 39370437
Alignment:
| Q |
8 |
tggacatcatcataccccactcccccacctgaactatcaagccaacttttttctcctttctttggtgaagaattgtttgtaaagcaaccagagaaaatct |
107 |
Q |
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||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39370264 |
tggacctcattataccccactcccccacctgaactatcaagccaacttttttctcctttctttggtgaagaattgtttgtaaagcaacctgagaaaatct |
39370363 |
T |
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| Q |
108 |
ccacacaagggnnnnnnnnnnctcaataaaaatttattactcaacctgaatgatataagaacaaaattgcaaaccc |
183 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39370364 |
tcacacaaggg--aaaaaaaactcaataaaaatttattactcaacctgaatgatataagaacaaaattgcaaaccc |
39370437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 452 - 525
Target Start/End: Original strand, 34263626 - 34263699
Alignment:
| Q |
452 |
tcatatattttggttgaaatcttctaccatgttgatcaccataattctttccttgcccacctttagttactagt |
525 |
Q |
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|||||| | ||||||||||||||||| |||||||||||||||||||||||| ||| || | ||||||||||||| |
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| T |
34263626 |
tcatatctcttggttgaaatcttctatcatgttgatcaccataattctttcattgtccgcatttagttactagt |
34263699 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 32496719 - 32496767
Alignment:
| Q |
169 |
caaaattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaa |
218 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| |||||||| |||||||||| |
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|
| T |
32496719 |
caaaattgcaaacc-tctcaattataatttttgcacagagaaattgcaaa |
32496767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 459 - 525
Target Start/End: Complemental strand, 24528764 - 24528698
Alignment:
| Q |
459 |
ttttggttgaaatcttctaccatgttgatcaccataattctttccttgcccacctttagttactagt |
525 |
Q |
| |
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|||| |||||||||| ||||||| |||||||||| |||||||||||| || ||| |||||||||||| |
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| T |
24528764 |
tttttgttgaaatctcctaccatattgatcaccacaattctttcctttccaaccattagttactagt |
24528698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 208 - 303
Target Start/End: Original strand, 3511669 - 3511762
Alignment:
| Q |
208 |
aaaattgcaaaccccctcaagatacacaattatccaagctcccaatgcaccaaaatagactagagttgttgtggtgaagaaaactcagtatgactc |
303 |
Q |
| |
|
|||||||||||| | ||||||| |||||| || |||| | |||||| |||| ||| ||||||||||||||||||||| ||||||||| ||| |||| |
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| T |
3511669 |
aaaattgcaaactctctcaagacacacaactacccaatc-cccaatacacccaaa-agactagagttgttgtggtgatgaaaactcaatataactc |
3511762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 37883016 - 37883075
Alignment:
| Q |
161 |
tataagaacaaaattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaaccc |
221 |
Q |
| |
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|||||| ||||||||||||||| |||| |||||||||| |||| |||||||||||||||| |
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| T |
37883016 |
tataaggacaaaattgcaaacc-tctcgattacaatttttgcatggaaaaattgcaaaccc |
37883075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 290
Target Start/End: Original strand, 9687435 - 9687552
Alignment:
| Q |
170 |
aaaattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaaccccctcaagatacacaattatccaagctcccaatgcaccaaaatagacta |
269 |
Q |
| |
|
||||||||||||||||||||||| || | |||| | |||||||||||||| ||||||| |||||| ||| ||||| || ||| ||| ||| |||||| |
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| T |
9687435 |
aaaattgcaaaccctctcaattaatatctttgca-tggaaaattgcaaaccctctcaagacacacaactattcaagc-cctaatatacccaaa-agacta |
9687531 |
T |
|
| Q |
270 |
gagttgttgtggtgaagaaaa |
290 |
Q |
| |
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||| ||||||||| ||||||| |
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| T |
9687532 |
gagctgttgtggtaaagaaaa |
9687552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 525
Target Start/End: Complemental strand, 2354087 - 2354024
Alignment:
| Q |
462 |
tggttgaaatcttctaccatgttgatcaccataattctttccttgcccacctttagttactagt |
525 |
Q |
| |
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||||||||||||| | |||| |||||||||||| || ||||||| || ||| |||||||||||| |
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| T |
2354087 |
tggttgaaatcttatgccatattgatcaccatatttatttccttaccaaccgttagttactagt |
2354024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 27048996 - 27049043
Alignment:
| Q |
172 |
aattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaacc |
220 |
Q |
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||||||||||| |||||||| |||||| ||||| ||||||||||||||| |
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| T |
27048996 |
aattgcaaacc-tctcaattgcaatttttgcacggaaaaattgcaaacc |
27049043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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