View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18467_low_7 (Length: 536)
Name: NF18467_low_7
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18467_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 19 - 523
Target Start/End: Original strand, 26721643 - 26722147
Alignment:
| Q |
19 |
cacccatcattatagcattattgtgatgaaacgaagtagaaaaaatgaaccaagaggagaggatttcagttagattcacgacgacagaggatttcataga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26721643 |
cacccatcattatagcattattgtgatgaaacgaagtagaaaaaatgaaccaaaaggagaggatttcagttagattcacgacgacagaggatttcataga |
26721742 |
T |
|
| Q |
119 |
cgaaggatgaatggtgttgtcgctgctatcctttcaaggaatgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaacatca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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|
| T |
26721743 |
cgaaggatgaatggtgttgtcgctgctatcctttcaaggaatgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaaaaaca |
26721842 |
T |
|
| Q |
219 |
aactcacnnnnnnnnnnctcattctcttattacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctg |
318 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
26721843 |
aactcacttttttttatctcattctcttcttacttttaatttcattttattctgtaataatgataacgagattgtttctatctacactttataggttcta |
26721942 |
T |
|
| Q |
319 |
caaatatggttcaaagaagaaaaaccatgagccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttcca |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26721943 |
caaatatggttcaaagaagaaaaaccatgagccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttcca |
26722042 |
T |
|
| Q |
419 |
tcaatgctctcagtactcaaaaacaaaactccaattctcataatcacaaaaccaaaaggcatcattccttctcaaattaattttttcttctcactcagaa |
518 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26722043 |
tcaatgctctcactactcaaagacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactcagaa |
26722142 |
T |
|
| Q |
519 |
taatc |
523 |
Q |
| |
|
||||| |
|
|
| T |
26722143 |
taatc |
26722147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 523
Target Start/End: Complemental strand, 45117267 - 45116775
Alignment:
| Q |
19 |
cacccatcattatagcattattgtgatgaaacgaagtagaaaaaa-tgaaccaagaggagaggatttcagttagattcacgacgacagaggatttcatag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45117267 |
cacccatcattatagcattattgtgatgaaacgaggtagaaaaaaatgaaccaagaggagaggatttcagttagattcacgacgacagaggatttcatag |
45117168 |
T |
|
| Q |
118 |
acgaaggatgaatggtgttgtcgctgctatcctttcaaggaatgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaacatc |
217 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||| ||||||||||||| ||||||||| |||||||||||||||||||||| |
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|
| T |
45117167 |
acgaaggatgaaaggtgttgtcgctgccatcctttcaaggaatgtaagaggctcatcactctctttttaagagcatgctcccaaagtgattgggaacatc |
45117068 |
T |
|
| Q |
218 |
aaactcacnnnnnnnnnnctcattctcttattacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttct |
317 |
Q |
| |
|
||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45117067 |
aaattcacttttttttatctcattctcttcttacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttct |
45116968 |
T |
|
| Q |
318 |
gcaaatatggttcaaagaagaaaaaccatgagccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttcc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45116967 |
gcaaatatggttcaaagaagaaaaaccatgagccttggattatg-------------atttgagaaaatggtttaagactctatttgttgtgtaatttcc |
45116881 |
T |
|
| Q |
418 |
atcaatgctctcagtactcaaaaacaaaactccaattctcataatcacaaaaccaaaaggcatcattccttctcaaattaattttttcttctcactcaga |
517 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45116880 |
atcaatgctctcactactcaaagacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactcaga |
45116781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 523
Target Start/End: Original strand, 2987110 - 2987603
Alignment:
| Q |
19 |
cacccatcattatagcattattgtgatgaaacgaagtagaaaa-aatgaaccaagaggagaggatttcagttagattcacgacgacagaggatttcatag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2987110 |
cacccatcattatagcattattgtgatgaaacgaagtagaaaaaaatgaaccaagaggagaggatttcagttagattcacgacgacagaggatttcgtag |
2987209 |
T |
|
| Q |
118 |
acgaaggatgaatggtgttgtcgctgctatcctttcaaggaatgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaacatc |
217 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2987210 |
acgaaggatgaaaggtgttgtcgctgccatcctttcaaggaatgtaagaggcttatcactctctttttaagagcatgttcccaaagtgattgggaacatc |
2987309 |
T |
|
| Q |
218 |
aaactcac-nnnnnnnnnnctcattctcttattacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttc |
316 |
Q |
| |
|
||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2987310 |
aaattcactttttttttatctcattctcttcttacttttaatttcattttattctgtaataatgataatgagattgtttctatctatactttataggttc |
2987409 |
T |
|
| Q |
317 |
tgcaaatatggttcaaagaagaaaaaccatgagccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttc |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2987410 |
tgcaaatatggttcaaagaagaaaaaccatgagccttggattatg-------------atttgagaaaatggtttaatactctatttgttgtgtaatttc |
2987496 |
T |
|
| Q |
417 |
catcaatgctctcagtactcaaaaacaaaactccaattctcataatcacaaaaccaaaaggcatcattccttctcaaattaattttttcttctcactcag |
516 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2987497 |
catcaatgttctcactactcaaagacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactcag |
2987596 |
T |
|
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