View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18467_low_9 (Length: 517)
Name: NF18467_low_9
Description: NF18467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18467_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 20 - 497
Target Start/End: Original strand, 33176867 - 33177347
Alignment:
| Q |
20 |
tattctctccttgatggttcaagcagaatgtcgaccatggaaccagtggtgcataaactgtatatcataatgaaagaaacc-atatcttgaatccagaaa |
118 |
Q |
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| T |
33176867 |
tattctctccttgatggtccaagcagaatgtcgaccatggaaccagtggtgcataaactgtatattataatgaaagaaacccatatcttgaacccagaaa |
33176966 |
T |
|
| Q |
119 |
aaactaaatccaatatttttaaaccaaaaattgcaagagaaaattcgtgaagagcccatggtggtgcagaataatagagtcctaaaaacaagctcaaggg |
218 |
Q |
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| T |
33176967 |
caactaaatccaatatttttaaaccaaaaattgcaagagaaaattcgtgaagagcccatggcggtgccgaataatagagtcctgaaatcaagctcaaggg |
33177066 |
T |
|
| Q |
219 |
aaagaggtccgcagaggctttaaataacaaataaagtttactagaggatcacaacaatggaaaaacactccgatcagaactccttggatgaaatagtagt |
318 |
Q |
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| T |
33177067 |
aacgagatccgccaaggctttaaataacaaataaagtttactagaggatcacaacaatggaaaaacactccgattagaactccttggatgaaatagtagt |
33177166 |
T |
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| Q |
319 |
gagtagtcaataggaa-cccttggtgaacgaccccgagaggtgtttagaggtggagctgcgctgataagactgcacaccgccatttttaatgaggaaagg |
417 |
Q |
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|||||||| ||||||| |||||||||||||||||||||||||||||| |||||| | ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33177167 |
gagtagtcgataggaaccccttggtgaacgaccccgagaggtgtttaaaggtggtgttgcactgataagactgcacaccgccatttttaatgaggaaagg |
33177266 |
T |
|
| Q |
418 |
atgaaaggttgagcttttgtcgcgcggctgagtatgaagagagagaacataggatacatgttcttaatcaa-gtattcata |
497 |
Q |
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| T |
33177267 |
atgaaaggttgagcttttgtcgcgcggctgagtatgaagagagagaacataggatacatgttcttaatcaacgtattcata |
33177347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 203 - 403
Target Start/End: Original strand, 23356790 - 23356992
Alignment:
| Q |
203 |
aaaacaagctcaagggaaagaggtccgcagaggctttaaataacaaataaagtttactagaggatcacaacaatg-gaaaaacactccgatcagaactcc |
301 |
Q |
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|||||||||||||| ||| |||| |||| ||||| ||||| |||||||||||||||||||||| |||||||| | ||||||||||||||||| || || |
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| T |
23356790 |
aaaacaagctcaagtgaacgaggaccgcgaaggctctaaatcacaaataaagtttactagaggaccacaacaaggacaaaaacactccgatcagtacccc |
23356889 |
T |
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| Q |
302 |
ttggatgaaatagtagtgagtagtcaataggaac-ccttggtgaacgaccccgagaggtgtttagaggtggagctgcgctgataagactgcacaccgcca |
400 |
Q |
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| T |
23356890 |
ttggatgaaatagtagtgagaagtctattggaactccttggtgaatgacctcgagaggtgtttaagggtaatgttgcgctgataagcctgcacaccacca |
23356989 |
T |
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| Q |
401 |
ttt |
403 |
Q |
| |
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||| |
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|
| T |
23356990 |
ttt |
23356992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 23356708 - 23356753
Alignment:
| Q |
103 |
atcttgaatccagaaaaaactaaatccaatatttttaaaccaaaaa |
148 |
Q |
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| T |
23356708 |
atcttgaatctagaaacaaccaaatccaatatttttaaaccaaaaa |
23356753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 485
Target Start/End: Original strand, 23357200 - 23357239
Alignment:
| Q |
446 |
tgagtatgaagagagagaacataggatacatgttcttaat |
485 |
Q |
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| T |
23357200 |
tgagtatgaagagagagaagagaggatacatgttcttaat |
23357239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 497
Target Start/End: Complemental strand, 23340747 - 23340657
Alignment:
| Q |
406 |
aatgaggaaaggatgaaaggttgagcttttgtcgcgcggctgagtatgaagagagagaacataggatacatgttcttaatc-aagtattcata |
497 |
Q |
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|||||||||| |||||| || |||||||| || | ||||||||||| |||||||||| | | |||||||||||||| || ||||||||||| |
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| T |
23340747 |
aatgaggaaatgatgaagggatgagctttggtggatcggctgagtat--agagagagaagagatgatacatgttcttagtcaaagtattcata |
23340657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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