View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18468_high_1 (Length: 559)
Name: NF18468_high_1
Description: NF18468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18468_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 542
Target Start/End: Original strand, 32186758 - 32187284
Alignment:
| Q |
18 |
atgaatactataagctacttatgattagtgacatcaattattgttaagagtttccaattatcctcaaatattgatccactagtacatcatatgaaactct |
117 |
Q |
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| T |
32186758 |
atgaatactataagctacttatgattagtgacatcaattattttta-gagtttccaattatcctcaaatattgatccactagtacatcatatgaaactct |
32186856 |
T |
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| Q |
118 |
tcttcaccctaaacacgtcatttgtgaaatatagtagttgattactataaccactaatnnnnnnngttgaaataacaacgaaaattttagatgatgacaa |
217 |
Q |
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| T |
32186857 |
tcttcaccctaaacacgtcatttgtgaaatatagtagttgattactataaccactaataaaaaa-gatgaaataacaacgaaaattttagatgatgacaa |
32186955 |
T |
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| Q |
218 |
caacttacaaaaatcttgtaaggatattttcagttcaatgaaaaatctggcttcaaatatcaacttgcatgctttcatggctaaaatcaaaacactattt |
317 |
Q |
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| T |
32186956 |
caacttacaaaaatcttgtaaggatattttcagttcaatgaaaaatctggcttcaaatatcaacttgcatgctttcatggctaaaatcaaaacactattt |
32187055 |
T |
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| Q |
318 |
gcataaatggactagtctattttagggcaacaagagtttttgtgttgcggcgataataggggcaacaagaaataatttagggc-ttactttagacccttt |
416 |
Q |
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| T |
32187056 |
gcataaatggactagtctattttagggcaacaagagtttttgtgttgcggcgataataggggcaacaagaaataatttagggctttactttagacccttt |
32187155 |
T |
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| Q |
417 |
cctaaaaatatctatatctagata--ttttttcattgtgaaaatactataccatttg-actgaagtatctttggaactttataaaaatagaatattgtgt |
513 |
Q |
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| T |
32187156 |
cctaaaaatatctatatctagatattttttttcattgtgaaaatactataccatttgaactgaagtatctttggaactttatacaaatagaatattgtgt |
32187255 |
T |
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| Q |
514 |
gtgtgcatgcatgtatagtctgaatgttt |
542 |
Q |
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| T |
32187256 |
gtatgcatgcatgtataatctgaatgttt |
32187284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 211 - 301
Target Start/End: Original strand, 32186322 - 32186412
Alignment:
| Q |
211 |
atgacaacaacttacaaaaatcttgtaaggatattttcagttcaatgaaaaatctggcttcaaatatcaacttgcatgctttcatggctaa |
301 |
Q |
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| T |
32186322 |
atgacaacaacttacaaagatcttttaaggatattttaagttcaaataaatatctgtctaaaaatatcaacttccatgctttcatgactaa |
32186412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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