View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18468_high_5 (Length: 320)
Name: NF18468_high_5
Description: NF18468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18468_high_5 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 303
Target Start/End: Original strand, 25034965 - 25035269
Alignment:
| Q |
16 |
gaagcaagacctgatgtagaaagcaaaatttcacaacagtcgaaacccga--------------gatttatgtgaaaagttattttcagctgatgtaaaa |
101 |
Q |
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| T |
25034965 |
gaagcaagacctgatgtagaaagcaagatttcacaacagtcgaaacccgatgtgaaaggatgtggatttatgtgaaaagttattttcagctgatgtaaaa |
25035064 |
T |
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| Q |
102 |
actctgttctacattaatgatcattgcatttttgtacttt---cttagctttatacttttatgatttgaaaagattttaggtcataattttatattttta |
198 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25035065 |
actctgttctacattagtgatcattgcatttttgcactttactcttagctttatacttttatgatttgaaaagattttaggtcataattttatattttta |
25035164 |
T |
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| Q |
199 |
gcttgtttctaaactttgggttattcttgagctttaatatatttctttgattaattttatgaattatccacatattaacccctgatcattatgtaggcca |
298 |
Q |
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| T |
25035165 |
gcttgtttctaaactttgggttattcttgagctttaatatatttctttgattaattttatgaattatccacatattaacccctgatcattatgtaggcca |
25035264 |
T |
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| Q |
299 |
tacct |
303 |
Q |
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||||| |
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| T |
25035265 |
tacct |
25035269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 11899633 - 11899676
Alignment:
| Q |
22 |
agacctgatgtagaaagcaaaatttcacaacagtcgaaacccga |
65 |
Q |
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| T |
11899633 |
agacctgatgtaaaaaacaagatttcacaacagtcgaaacccga |
11899676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 23065329 - 23065289
Alignment:
| Q |
23 |
gacctgatgtagaaagcaaaatttcacaacagtcgaaaccc |
63 |
Q |
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| T |
23065329 |
gacctgatgtagaaaacaagatttcacaacagtccaaaccc |
23065289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 265
Target Start/End: Complemental strand, 146024 - 145942
Alignment:
| Q |
183 |
taattttatatttttagcttgtttctaaactttgggttattcttgagctttaatatatttctttgattaattttatgaattat |
265 |
Q |
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| T |
146024 |
taattttagcttcttagcttgtttctaaacttcgggtcaagtttgagctctaatgtgtttctttgattaattttatgaattat |
145942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 10379979 - 10379930
Alignment:
| Q |
17 |
aagcaagacctgatgtagaaagcaaaatttcacaacagtcgaaacccgag |
66 |
Q |
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||||||||||||||||||||||||| |||||||||||||| | ||||||| |
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| T |
10379979 |
aagcaagacctgatgtagaaagcaagatttcacaacagtctagacccgag |
10379930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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