View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18468_high_6 (Length: 270)
Name: NF18468_high_6
Description: NF18468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18468_high_6 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 47819416 - 47819167
Alignment:
| Q |
17 |
agaagaggcactcctccaatgagaacacaactccccatccaacatagtagttacttgcggaccatacttttccaccaacacttccttccacaaagccact |
116 |
Q |
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| T |
47819416 |
agaagaggcactcctccaatgagaacacaactccccatccaacatagtagttacttgcggaccatacttttccaccaacacttccttccacaaagccact |
47819317 |
T |
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| Q |
117 |
tccccatgcaacaacctccacttccacttagccaataagctaatattaagaattctaacatcacgcacacctagaccaccattctctttcgtttgacaaa |
216 |
Q |
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| T |
47819316 |
tccccatgcaacaacctccacttccacttagccaataagctaatattaagaattctaacatcacgcacacctagaccaccattctctttcgtttgacaaa |
47819217 |
T |
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| Q |
217 |
ccgtactccacctaacctaactaattttcctaccaccacctacacctccc |
266 |
Q |
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| T |
47819216 |
ccgtactccacctaacctaactaattttcctaccaccacctacacctccc |
47819167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 28570865 - 28570781
Alignment:
| Q |
115 |
cttccccatgcaacaacctccacttccacttagccaataagctaatattaagaattctaacatcacgcacacctagaccaccatt |
199 |
Q |
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| T |
28570865 |
cttccccatccaacaacctccacttccactttgccaacaacctaacatttaggattctaacatcgcgcacacctagaccaccatt |
28570781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 48156232 - 48156166
Alignment:
| Q |
99 |
tccttccacaaagccacttccccatgcaacaacctccacttccacttagccaataagctaatattaa |
165 |
Q |
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| T |
48156232 |
tccttccacaaagccttttccccatccaacaacctccatttccatttcgccaaaagactaatattaa |
48156166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 87 - 270
Target Start/End: Original strand, 12828107 - 12828290
Alignment:
| Q |
87 |
tccaccaacacttccttccacaaagccacttccccatgcaacaacctccacttccacttagccaataagctaatattaagaattctaacatcacgcacac |
186 |
Q |
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| T |
12828107 |
tccaccaaaacatccttccacaacacctcttcctcatccaccaacctccacttccactttgccaataaactaacattaaggattctaacatcacacacac |
12828206 |
T |
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| Q |
187 |
ctagaccaccattctctttcgtttgacaaaccgtactccacctaacctaactaattttcctaccaccacctacacctccccaaa |
270 |
Q |
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| T |
12828207 |
ctaaaccaccgttgttcttagtttggcaaaccaatttccacctcacccaattaattttcctaccgccgcgtacccctccccaaa |
12828290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 270
Target Start/End: Original strand, 42749756 - 42749924
Alignment:
| Q |
102 |
ttccacaaagccacttccccatgcaacaacctccacttccacttagccaataagctaatattaagaattctaacatcacgcacacctagaccaccattct |
201 |
Q |
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| T |
42749756 |
ttccacaatgcaacttcaccatccaacaacctccacttccatttcaccaataaactcacattaagtattctaacatctcgtactcctaaacccccgttca |
42749855 |
T |
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| Q |
202 |
ctttcgtttgacaaaccgtactccacctaacctaactaattttcctaccaccacctacacctccccaaa |
270 |
Q |
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| T |
42749856 |
ccttttgttgacaaaccaacttccacctcacccaactaatcttcctaccacctcccactcctccccaaa |
42749924 |
T |
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