View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18468_low_2 (Length: 407)
Name: NF18468_low_2
Description: NF18468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18468_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 23 - 392
Target Start/End: Complemental strand, 47819731 - 47819362
Alignment:
| Q |
23 |
atgcgaccacctcatatcctccaaatcacccaaaagattccctattagttgctcctcccaatcaaaaaactccctcctccactcaaaatgtcactccgtt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47819731 |
atgcgaccacctcatatcctccaaatcacccaaaagattccctattagttgctcctcccaatcaaaaaactccctcctccactcaaaatgtcactccgtt |
47819632 |
T |
|
| Q |
123 |
gaagagccaactacctcccctatctctcccaccaacccctccttttgatttgaaatagagaagagtctagggtatttactcctaaacgtccgatcaccct |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47819631 |
gaagagccaactacctcccctatctctcccaccaacccctccttttgatttgaaatagagaagagtctagggtatttactcctaaacgtccgatcaccct |
47819532 |
T |
|
| Q |
223 |
tccatttagcattccaaaagctagtattcaatccattccccacaactctcattaactccgagttaaaccacccttgaactccaaaattctctaaattaat |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47819531 |
tccatttagcattccaaaagctagtattcaatccattccccacaactctcactaactccgagttaaaccacccttgaactccaaaattctctaaattaac |
47819432 |
T |
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| Q |
323 |
aacatccttccaccaagaagaggcactcctccaatgagaacacaactccccatccaacatagtagttact |
392 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47819431 |
aacatccttccaccaagaagaggcactcctccaatgagaacacaactccccatccaacatagtagttact |
47819362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 69 - 357
Target Start/End: Complemental strand, 28571232 - 28570944
Alignment:
| Q |
69 |
agttgctcctcccaatcaaaaaactccctcctccactcaaaatgtcactccgttgaagagccaactacctcccctatctctcccaccaacccctcctttt |
168 |
Q |
| |
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|||||||||||||||||||||| |||| ||||||||||||| | |||||||||||||||| || ||||||||||| || || |||| | || |||| |
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| T |
28571232 |
agttgctcctcccaatcaaaaatgtcccgcctccactcaaaacgcgactccgttgaagagcctaccacctcccctatatcacctaccatcgattcttttt |
28571133 |
T |
|
| Q |
169 |
gatttgaaatagagaagagtctagggtatttactcctaaacgtccgatcacccttccatttagcattccaaaagctagtattcaatccattccccacaac |
268 |
Q |
| |
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| T |
28571132 |
ggtttgaaatcgagaagagtcttgggtatttactcctaaaagttgtatcccctcgccacttaatattccaaaaactagagttccttccattgccaatgat |
28571033 |
T |
|
| Q |
269 |
tctcattaactccgagttaaaccacccttgaactccaaaattctctaaattaataacatccttccaccaagaagaggcactcctccaat |
357 |
Q |
| |
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||| |||||||| | |||||||||||||| | ||||| || |||||||| | ||||||||||||||| ||| |||| |||||||| |
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| T |
28571032 |
tctagttaactccaaattaaaccacccttgggcaccaaagttttctaaatttaccacatccttccaccaaagagaagcacacctccaat |
28570944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 27 - 214
Target Start/End: Original strand, 12825972 - 12826159
Alignment:
| Q |
27 |
gaccacctcatatcctccaaatcacccaaaagattccctattagttgctcctcccaatcaaaaaactccctcctccactcaaaatgtcactccgttgaag |
126 |
Q |
| |
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||||||||||||| |||||||||| ||| ||| || | | |||||||||||||||| ||||||||||||| |||||||| ||||| |||| |||| | | |
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| T |
12825972 |
gaccacctcatattctccaaatcattcaagagactcacaaatagttgctcctcccaaccaaaaaactcccttctccactcgaaatgccacttcgttaagg |
12826071 |
T |
|
| Q |
127 |
agccaactacctcccctatctctcccaccaacccctccttttgatttgaaatagagaagagtctagggtatttactcctaaacgtccg |
214 |
Q |
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| T |
12826072 |
aaccaaccgcctcccctatctcccccacacacaactccttttggtttgacattgagtaaagtctaggatatttactcttaaacgtccg |
12826159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 69 - 357
Target Start/End: Original strand, 42749402 - 42749690
Alignment:
| Q |
69 |
agttgctcctcccaatcaaaaaactccctcctccactcaaaatgtcactccgttgaagagccaactacctcccctatctctcccaccaacccctcctttt |
168 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| ||||| | ||| ||||| ||| ||| | ||||||||||||||||||||| || |||| |
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| T |
42749402 |
agttgctcctcccaatcaaaaaactcccatctccaatcaaagttccacaccgttaaagcaccatcctcctcccctatctctcccaccattgattcttttt |
42749501 |
T |
|
| Q |
169 |
gatttgaaatagagaagagtctagggtatttactcctaaacgtccgatcacccttccatttagcattccaaaagctagtattcaatccattccccacaac |
268 |
Q |
| |
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||||||| || | || | ||||||||||||||||||||||| ||| || || |||||||| | ||||||| ||||| ||| || ||||| | | |
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| T |
42749502 |
gatttgagatcaaaaacaatctagggtatttactcctaaacgaccgctcccctcgccatttagtactccaaaaactagtgctcataccgttcccaatgat |
42749601 |
T |
|
| Q |
269 |
tctcattaactccgagttaaaccacccttgaactccaaaattctctaaattaataacatccttccaccaagaagaggcactcctccaat |
357 |
Q |
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||| | |||||| ||||||||||||||||| || ||| | |||||||| | |||||||||||||||| | || ||| ||||||||| |
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| T |
42749602 |
tctaaccaactcctagttaaaccacccttgagtgccgaaactatctaaattgacaacatccttccaccaacacgaagcaatcctccaat |
42749690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 69 - 156
Target Start/End: Complemental strand, 24189025 - 24188938
Alignment:
| Q |
69 |
agttgctcctcccaatcaaaaaactccctcctccactcaaaatgtcactccgttgaagagccaactacctcccctatctctcccacca |
156 |
Q |
| |
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||||||||||||||||||||||| |||| |||||||||||||| |||||| |||||||||| || ||||||||||| || ||||||| |
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| T |
24189025 |
agttgctcctcccaatcaaaaaaatcccgtctccactcaaaatgccactcccttgaagagcctaccacctcccctatgtcacccacca |
24188938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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