View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18468_low_3 (Length: 350)
Name: NF18468_low_3
Description: NF18468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18468_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 18036188 - 18036065
Alignment:
| Q |
5 |
actaacaatacgaaataactggattctctcaaacacatacacacaaacaacaaaagagtgatgatctcacttgatcagtaaaacgacacctggtgcggtg |
104 |
Q |
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| T |
18036188 |
actaacaataggaaataactggattctcttaaacacatacacacaaacaacaaaagagtgatgatctcacttgatcaataaaacgacaccaggtgcggtg |
18036089 |
T |
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| Q |
105 |
agcttgttgttcttgagtgattcg |
128 |
Q |
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| T |
18036088 |
agcttgttgttcttgagtgattcg |
18036065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 226 - 336
Target Start/End: Complemental strand, 18035821 - 18035711
Alignment:
| Q |
226 |
gtgttggtctaatgtggaattgtgcctgtttgttgggattgtgaacgtaggcttttgagcagtacataacagtagcccaatgtcatcatgagtgaagagt |
325 |
Q |
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| T |
18035821 |
gtgttggtctaatgtggaattgtgtctgtttgttgggattgtgaacgtaggcttttgagcagtccataacagtagcccaaagtcatcatgagtgaagagt |
18035722 |
T |
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| Q |
326 |
gttgactttga |
336 |
Q |
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| T |
18035721 |
gttgactttga |
18035711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 18021696 - 18021575
Alignment:
| Q |
5 |
actaacaatacgaaataactggattctctcaaacacatacacacaaacaacaaaagagtgatgatctcacttgatcagtaaaacgacacctggtgcggtg |
104 |
Q |
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| T |
18021696 |
actaacaataggaaataacttaattctctcaaacacatacacacaaacaacaaaagagtgatga--tcacttgatcagtaaaacgacatcttgtatggtg |
18021599 |
T |
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| Q |
105 |
agcttgttgttcttgagtgattcg |
128 |
Q |
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| T |
18021598 |
agcttgttgttcttgagtgattcg |
18021575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 128 - 214
Target Start/End: Complemental strand, 18036040 - 18035954
Alignment:
| Q |
128 |
gcaagtttttaatggtagagaatcattgttcggcggttacgaacaacaggattcgtgaacctcaaaggttacaaagtgatgatgatt |
214 |
Q |
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| T |
18036040 |
gcaagtttttaatggtagagaatcattgttcggcaggtacgaacaacaggattcgtaaacctcaaaggttacaaagtgatgatgatt |
18035954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 128 - 263
Target Start/End: Complemental strand, 18021544 - 18021415
Alignment:
| Q |
128 |
gcaagtttttaatggtagagaatcattgttcggcggttacgaacaacaggattcgtgaacctcaaaggttacaaagtgatgatgattggggtgaagtagt |
227 |
Q |
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|||||||||||| ||||||||||||||||||| | |||| ||| |||||||||| | |||| ||||||||||||||||||||||| |||| | | |
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| T |
18021544 |
gcaagtttttaaaggtagagaatcattgttcgatgattacagacatcaggattcgtaaccctcgaaggttacaaagtgatgatgatt----tgaatt--t |
18021451 |
T |
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| Q |
228 |
gttggtctaatgtggaattgtgcctgtttgttggga |
263 |
Q |
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| T |
18021450 |
gttggtccaatgtggaattgtgcttgtttgttggga |
18021415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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