View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18469_high_2 (Length: 653)
Name: NF18469_high_2
Description: NF18469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18469_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 606; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 7 - 635
Target Start/End: Original strand, 41920638 - 41921267
Alignment:
| Q |
7 |
tcgaataatatgtatttaaatgtataccttttttaactactactgtgtaacatgctgtacaaatacataagccaa-tttccctttaaatacaagaaactt |
105 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41920638 |
tcgaataatatgtatttaaatgtatacctttttcaactactactgtgtaacatgctgtacaaatacataagccaaatttccctttaaatacaagaaactt |
41920737 |
T |
|
| Q |
106 |
gttatgcaagtaaaactttgttaacttgattgtgttttctacatgtcaggtcactccatttactcgtcttttggattctatttgagaatgtcatgtctct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41920738 |
gttatgcaagtaaaactttgttaacttgattgtgttttctacatgtcaggtcactccatttactcgtcttttggattctatttgagaatgtcatgtctct |
41920837 |
T |
|
| Q |
206 |
gcatagagcaaaggcaactgttattggtctactggaggctagtcgagtgaatgaatggattgtcactgagaaacttggagatgctctcaaggctaaagca |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41920838 |
gcatagagcaaaggcaactgttattggtctactggaggctagtcgagtgaatgaatggattgtcactgagaaacttggagatgctctcaaggctaaagca |
41920937 |
T |
|
| Q |
306 |
gggactaaagcactcaagaagcctcgattcaggattgaagacaggtataaatcagtactattgtcttagttatttggtagcattcaactagttttttaat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41920938 |
gggactaaagcactcaagaagcctcgattcaggattgaagacaggtataaattagtactattgtcttagttatttgatagcattcaactagttttttaat |
41921037 |
T |
|
| Q |
406 |
catgattgtgtcacaatctttaatatttagagcatcgcaatctaagcaactgatgcgaccaatagtaaattgtggtcgcatagatgttgcagaaactttt |
505 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41921038 |
catgattgtgtcacaatctttaatatttagagcatcgcaatttaagcaactgatgcgaccaatagtaaattgtggtcgcatagatgttgcagaaactttt |
41921137 |
T |
|
| Q |
506 |
atgtcgtgactcggatggcagttgcaaaccacttttaaaaactctggcattcaatgatttctaaatagtaaatgttatatggtacttctacttacctaca |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41921138 |
atgtcgtgactcggatggcagttgcaaaccacttttaaaaactctggcattcaatgatttctaaatagtaaatgttatatggtacttctacttacctaca |
41921237 |
T |
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| Q |
606 |
tttgttatctttgttctcaaatatcaaata |
635 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
41921238 |
tttgttatctttgttctcaaatatcaaata |
41921267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 1e-49; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 152 - 356
Target Start/End: Complemental strand, 26829966 - 26829762
Alignment:
| Q |
152 |
caggtcactccatttactcgtcttttggattctatttgagaatgtcatgtctctgcatagagcaaaggcaactgttattggtctactggaggctagtcga |
251 |
Q |
| |
|
||||||| |||||||||| |||||||||||| |||| |||||| ||||||||| ||| || |||||||||| ||||||||||||| ||||||||| || |
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| T |
26829966 |
caggtcattccatttacttgtcttttggattttattcgagaataccatgtctcttcatcgaacaaaggcaacgattattggtctactagaggctagtaga |
26829867 |
T |
|
| Q |
252 |
gtgaatgaatggattgtcactgagaaacttggagatgctctcaaggctaaagcagggactaaagcactcaagaagcctcgattcaggattgaagacaggt |
351 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||| |||||| | ||||| |||||| |||| |||||| ||||||| |||||||| |
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| T |
26829866 |
gtgaatgaatggattgtcactgaaaaacttggagatgctttcaagggtaaagctagtggtaaaggactcaaaaagcttcgatttaggattggagacaggt |
26829767 |
T |
|
| Q |
352 |
ataaa |
356 |
Q |
| |
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||||| |
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|
| T |
26829766 |
ataaa |
26829762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 151 - 297
Target Start/End: Complemental strand, 26783078 - 26782932
Alignment:
| Q |
151 |
tcaggtcactccatttactcgtcttttggattctatttgagaatgtcatgtctctgcatagagcaaaggcaactgttattggtctactggaggctagtcg |
250 |
Q |
| |
|
|||||||| | |||||| | || ||||||||||| ||||||||| ||||||| | || ||||||||||||| |||||||| |||| ||| ||||| | |
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| T |
26783078 |
tcaggtcattgcatttagttgtattttggattctctttgagaataccatgtctttaaatcgagcaaaggcaacaattattggtatactagagactagtag |
26782979 |
T |
|
| Q |
251 |
agtgaatgaatggattgtcactgagaaacttggagatgctctcaagg |
297 |
Q |
| |
|
||||||||||||||||||||| || ||||||||| ||||||| |||| |
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| T |
26782978 |
agtgaatgaatggattgtcacagaaaaacttggaaatgctcttaagg |
26782932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 151 - 357
Target Start/End: Complemental strand, 26789451 - 26789245
Alignment:
| Q |
151 |
tcaggtcactccatttactcgtcttttggattctatttgagaatgtcatgtctctgcatagagcaaaggcaactgttattggtctactggaggctagtcg |
250 |
Q |
| |
|
|||||||| || ||||| | |||||||| |||| ||||| ||| ||| |||| ||| || |||| ||||| |||||||||| || ||| ||||| | |
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| T |
26789451 |
tcaggtcattctatttagttatcttttgggttctctttgaaaataccatagctctacatcgaacaaaagcaacaattattggtctgctagagactagtag |
26789352 |
T |
|
| Q |
251 |
agtgaatgaatggattgtcactgagaaacttggagatgctctcaaggctaaagcagggactaaagcactcaagaagcctcgattcaggattgaagacagg |
350 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||| || ||||| |||||| |||| |||||| | |||| ||||||| |
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| T |
26789351 |
agtgaatgaatggattgtcactgaaaaacttggagatgctctcaagggtaaagatggtggtaaagaactcaaaaagcttcgatttaaaattgtagacagg |
26789252 |
T |
|
| Q |
351 |
tataaat |
357 |
Q |
| |
|
|| |||| |
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|
| T |
26789251 |
taaaaat |
26789245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 172 - 295
Target Start/End: Complemental strand, 26816260 - 26816137
Alignment:
| Q |
172 |
tcttttggattctatttgagaatgtcatgtctctgcatagagcaaaggcaactgttattggtctactggaggctagtcgagtgaatgaatggattgtcac |
271 |
Q |
| |
|
|||||||| |||| ||||| ||| ||| |||| ||| || |||| ||||| ||||||||||||| ||| ||||| |||||||||||||||||||||| |
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| T |
26816260 |
tcttttgggttctctttgaaaataccatagctctacatcgaacaaaagcaacaattattggtctactagagactagtagagtgaatgaatggattgtcac |
26816161 |
T |
|
| Q |
272 |
tgagaaacttggagatgctctcaa |
295 |
Q |
| |
|
||| |||||||||||||||||||| |
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|
| T |
26816160 |
tgaaaaacttggagatgctctcaa |
26816137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 2301218 - 2301264
Alignment:
| Q |
251 |
agtgaatgaatggattgtcactgagaaacttggagatgctctcaagg |
297 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||| ||||||| |||| |
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| T |
2301218 |
agtgaatgaatggattgtcactaaaaaacttggaaatgctcttaagg |
2301264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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