View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18469_high_3 (Length: 532)
Name: NF18469_high_3
Description: NF18469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18469_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 192 - 422
Target Start/End: Complemental strand, 19077356 - 19077127
Alignment:
| Q |
192 |
caccttaggttaatcaattgcagcttctacgcctaaactcatgggatataacttatcattgtactccatcaatctatcaacataactaagccctacaatt |
291 |
Q |
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| T |
19077356 |
caccttaggttaatcaattgcagcttctacgcctaaactcattggatataactcatcattgtactccatcaatctatcaacataactaagccctacaatt |
19077257 |
T |
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| Q |
292 |
tctattttggattttcttcctctatttctggactatgcctttatatgtttaaataaaagctcaagtcctgcaaagttcttatcaaaccacccaaagctcc |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
19077256 |
tctattttggattttcttcctctatttctggactatgcctttatatgtttaaataaaagctcaagttctgcaaaattcttatcaaaccacccaaagctcc |
19077157 |
T |
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| Q |
392 |
aatggtttgattagcaaatagttaattaatg |
422 |
Q |
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||| |||| |||||||||||||||||||||| |
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| T |
19077156 |
aatagttt-attagcaaatagttaattaatg |
19077127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 19077538 - 19077391
Alignment:
| Q |
10 |
aaatgaacaaccatatatgacgattccttaatcaccttttatatcacttcactttaatataagttaacgtcttttaggaaattctgatcaatcaatctcc |
109 |
Q |
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| T |
19077538 |
aaatgaacaaccagacatggcgattccttaatcaccttttatatcacttcactttaatataagttaacgtcttctacgaaattctgatcaatcaatctcc |
19077439 |
T |
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| Q |
110 |
catgataatctctccaatgattccataataatcttggcataggatatc |
157 |
Q |
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| T |
19077438 |
catgataatctctccaatgattccataataatcttggcataggatatc |
19077391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 19079263 - 19079116
Alignment:
| Q |
10 |
aaatgaacaaccatatatgacgattccttaatcaccttttatatcacttcactttaatataagttaacgtcttttaggaaattctgatcaatcaatctcc |
109 |
Q |
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| T |
19079263 |
aaatgaacaatcaaatatgacgattccttaatcaccttttacatcacttcactttaatataagttaacgtcttctacgaaattttgatcaatcaatctcc |
19079164 |
T |
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| Q |
110 |
catgataatctctccaatgattccataataatcttggcataggatatc |
157 |
Q |
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| T |
19079163 |
catgataatctctccaatgattccataataatcttggcataggatatc |
19079116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 241 - 353
Target Start/End: Complemental strand, 19079008 - 19078896
Alignment:
| Q |
241 |
aacttatcattgtactccatcaatctatcaacataactaagccctacaatttctattttggattttcttcctctatttctggactatgcctttatatgtt |
340 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19079008 |
aactcatcattgtactccatcaatctatcaacataactaagccctacaatttctattttggattttcttccactatttctggactatgcctttatatgtt |
19078909 |
T |
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| Q |
341 |
taaataaaagctc |
353 |
Q |
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|||||||| |||| |
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| T |
19078908 |
taaataaaggctc |
19078896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 192 - 348
Target Start/End: Original strand, 19078091 - 19078247
Alignment:
| Q |
192 |
caccttaggttaatcaattgcagcttctacgcctaaactcatgggatataacttatcattgtactccatcaatctatcaacataactaagccctacaatt |
291 |
Q |
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|
|||||||||| | ||||||| ||||||| |||||| |||| |||| ||||| ||||| ||||||||||| |||||| |||| ||| | | | |||| |
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| T |
19078091 |
caccttaggtaagtcaattggagcttcttaacctaaaatcattggatgtaactcatcatcgtactccatcactctatctacatgacttatgcatttaatt |
19078190 |
T |
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| Q |
292 |
tctattttggattttcttcctctatttctggactatgcctttatatgtttaaataaa |
348 |
Q |
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|||||||| ||||||||||||||||| |||| ||||||||||| ||||| ||||| |
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| T |
19078191 |
tctattttatattttcttcctctatttttggaatatgcctttatcggtttagataaa |
19078247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 480 - 516
Target Start/End: Complemental strand, 19077069 - 19077033
Alignment:
| Q |
480 |
ctttcaagcttagcaaagaagatgcaacatcttgctt |
516 |
Q |
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|||||||||||||||||||||||||||| |||||||| |
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| T |
19077069 |
ctttcaagcttagcaaagaagatgcaacctcttgctt |
19077033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 480 - 516
Target Start/End: Original strand, 46921035 - 46921071
Alignment:
| Q |
480 |
ctttcaagcttagcaaagaagatgcaacatcttgctt |
516 |
Q |
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| T |
46921035 |
ctttcaagcttagcaaagaagatgcaacctcttgctt |
46921071 |
T |
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