View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18469_high_4 (Length: 498)
Name: NF18469_high_4
Description: NF18469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18469_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 5831033 - 5831304
Alignment:
| Q |
1 |
aatatagatacaaccaacattcgaattgtacaagttggacataaacagaggaaaatgtgaactaaaaacgaaaatgaggagaattgataacttacctctt |
100 |
Q |
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| T |
5831033 |
aatatagatacaaccaacattcgaattgtacaagttggacataaacagaggaaaatgtgaactaaaaacgaaaatgaggagaattgataacttacctctt |
5831132 |
T |
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| Q |
101 |
gattatggcttccaaaatgatgaaatgcgaagtttgtaaggtggtttagatggaaaatcaagtatattttaagggttttagatca-ttttttaatcaatt |
199 |
Q |
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| T |
5831133 |
gattatggcttccaaaatggtgaaatgcgaagtttgtaaggtggtttagatggaaaatcaagtatattttaagggttttagatcatttttttaatcaatt |
5831232 |
T |
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| Q |
200 |
tgttaaagggaaatgtaaaatgatcagccaaaaagttgtccacaccgtatattaatacgatttgttatacaa |
271 |
Q |
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| T |
5831233 |
tgttaaagggaaatgtaaaatgaacagccaaaaagttgtccacaccgtatattaatacggtttgttatacaa |
5831304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 349 - 453
Target Start/End: Original strand, 5831473 - 5831577
Alignment:
| Q |
349 |
gacttgacggttcttaaatgttattcatttgtggttgtgcttatagaaaagttgatctaaatgagatagcttttcatttttcaactacgaaacatatttc |
448 |
Q |
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| T |
5831473 |
gacttgactgttcttaaatgttattcatttgtggttgtgcttatagaaaagttgatctaaatgagatagcttttcatttttcaactacgaaacatatttc |
5831572 |
T |
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| Q |
449 |
actgt |
453 |
Q |
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||||| |
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| T |
5831573 |
actgt |
5831577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 5831393 - 5831439
Alignment:
| Q |
269 |
caatataacattactcaaaattaaaacaaaaccaatttaatcacatc |
315 |
Q |
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| T |
5831393 |
caatataacattactcaaaattaaaacaaaaccaatttaatcacatc |
5831439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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