View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18469_high_9 (Length: 351)
Name: NF18469_high_9
Description: NF18469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18469_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 127 - 333
Target Start/End: Complemental strand, 8830156 - 8829951
Alignment:
| Q |
127 |
cataactaactctacaaaatcatacatcacaatatagttcttttatggaacttactagctaaatttaaaaaagtatacactatctagatgaaaagtacac |
226 |
Q |
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| T |
8830156 |
cataactaactctacaaaatcatacatcacagtatagttcttttatggaacttactagctaaatttaagaaagtatacactatctagatgaaaagtacac |
8830057 |
T |
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| Q |
227 |
agttaaatttgttcatactctaattttcaaggccataagttttaaaatgtggcnnnnnnnncttgaaccaattgagaagctcatttaaataagattatga |
326 |
Q |
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| T |
8830056 |
agctaaatttgttcctactctaattttcaaggccataag-tttaaaatgtggcaaaaaaaacttgaaccaattgagaagctcattgaaataagattatga |
8829958 |
T |
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| Q |
327 |
atcatag |
333 |
Q |
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||||||| |
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| T |
8829957 |
atcatag |
8829951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 6 - 118
Target Start/End: Complemental strand, 8830415 - 8830303
Alignment:
| Q |
6 |
agcagcagagacaacaatagtggttgtaatgtaagtaataatattatagaatagattaaatgattcatggatgtatagttgttttataatctattgcgcg |
105 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8830415 |
agcagcagcaacaacagtagtggttgtaatgtaagtaataatattatagaatagagtaaatgattcatggatgtgtagttgttttataatctattgcgcg |
8830316 |
T |
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| Q |
106 |
cgcgcacatacac |
118 |
Q |
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||| |||| |||| |
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| T |
8830315 |
cgcacacacacac |
8830303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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