View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18469_low_14 (Length: 237)
Name: NF18469_low_14
Description: NF18469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18469_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 3803275 - 3803056
Alignment:
| Q |
1 |
gtacgaaagtttcacttgccagctgcaaccatgtctgtgtttgatataggtagtgtccttgtatgtactggactttatcgccaagttcttgttcccctgg |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3803275 |
gtacgaaagtttcacttaccagctgcaaccatgtctgtgtttgatataggtagtgtccttgtatgtactggactttatcgccaagttcttgttcccttgg |
3803176 |
T |
|
| Q |
101 |
ccggaaaattaagcggtaatcctaaggggttaagcgaacttcaaagaatgggagttggcctagttatcggaatgtttgcaatggtcgcagctggtgcaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3803175 |
ccggaaaattaagcggtaatcctaaggggttaagtgaacttcaaagaatgggagttggcctagttatcggaatgtttgcaatggtcgcagctggtgcaac |
3803076 |
T |
|
| Q |
201 |
agagtttgtacggcttaaac |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
3803075 |
agagtttgtacggcttaaac |
3803056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 397513 - 397728
Alignment:
| Q |
5 |
gaaagtttcacttgccagctgcaaccatgtctgtgtttgatataggtagtgtccttgtatgtactggactttatcgccaagttcttgttcccctggccgg |
104 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
397513 |
gaaaatttcacttgccagcagcaaccatgtctgtgtttgatatatgcagtgtccttgtatgcactggactttatcgccaagttctagttcccttggccgg |
397612 |
T |
|
| Q |
105 |
aaaattaagcggtaatcctaaggggttaagcgaacttcaaagaatgggagttggcctagttatcggaatgtttgcaatggtcgcagctggtgcaacagag |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||| |||||||||| ||| ||| |
|
|
| T |
397613 |
aaaattaagcggtaatcctaaggggttaagcgaacttcaaagaatgggagttggcctagttattggaatgcttgcgatggttgcagctggtgtaacggag |
397712 |
T |
|
| Q |
205 |
tttgtacggcttaaac |
220 |
Q |
| |
|
|||| | ||||||||| |
|
|
| T |
397713 |
tttgaaaggcttaaac |
397728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University