View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18469_low_5 (Length: 495)
Name: NF18469_low_5
Description: NF18469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18469_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 18 - 486
Target Start/End: Original strand, 1131129 - 1131597
Alignment:
| Q |
18 |
cgatgatttacctttctgattggaattggaaatctgtgacaagcttaacttgaagcatttattcatgataatattttaaattcaagttatgagaatttag |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1131129 |
cgatgattttcctttctgattggaattggaaatctgtgacaagcttaacttgaagcgtttattcatgatagtattttaaattcaagttatgagaatttag |
1131228 |
T |
|
| Q |
118 |
aaggacaaacaatatttcatgatgtacaaagatgatcttctcttctaaagaagcccaagcttcaaacagaaacatgtgacactaaaaatgtttgaaaatt |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1131229 |
aaggacaaacaatatttaatgatgtacaaagatgatcttctcttctaaagaagcccaagcttcaaacagaaacatgtgacactaaaaatgtttgaaaatt |
1131328 |
T |
|
| Q |
218 |
catagcaacttagcatggaaggttaaaacaaagcttacacacacagttgaaatccaagataacatggatatggatggtgcagagcttctagaacggcgag |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1131329 |
catagcaacttagcatggaaggttaaaacaaagcttacacacacagttgaaatccaagacaacatggatatggatggtgcagagcttctagaacggcgag |
1131428 |
T |
|
| Q |
318 |
gctcagagcgattatcatttgcaccaccgttagctccttttcctctagctttcttaattgagtcataagctcgttcaaatttttcctccttgatatattt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1131429 |
gctcagagcgattatcatttgcaccaccgttagctccttttcctctagctttcttaattgagtcataagctcgttcaaatttttcctccttgatatattt |
1131528 |
T |
|
| Q |
418 |
cttatcttctctgtgcaacttgattccttcttttatgcttccatagtttcctacatcttaatagaataa |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1131529 |
cttatcttctctgtgcaacttgattccttcttttatgcttccatagtttcctacatcttaatagaataa |
1131597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University