View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18469_low_6 (Length: 493)
Name: NF18469_low_6
Description: NF18469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18469_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 5e-94; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 25 - 219
Target Start/End: Original strand, 52782980 - 52783174
Alignment:
| Q |
25 |
gcatgaaactatgaagtattgttaagagttttacattagacgagataaagattgaatctatgtttataagtggaagtattcctcatcttacaaggtgatt |
124 |
Q |
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| T |
52782980 |
gcatgaaactatgaagtattgttaagagtttcacattagacgagataaagattgaatctatgtttataagtggaagtattcctcatcttacaaggtgatt |
52783079 |
T |
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| Q |
125 |
tgtaataataagttaggttcaatccaaattctaagataatagcagagcttatccaagatttgtcatgtctatctaatattaggcataagtcaacc |
219 |
Q |
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| T |
52783080 |
tgtaatattaagttaggttcaacccaaattctaagataatagcagagcctatccaaaatttgtcatgtctatctaatattaggcataagtcaacc |
52783174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 25 - 219
Target Start/End: Original strand, 52789244 - 52789438
Alignment:
| Q |
25 |
gcatgaaactatgaagtattgttaagagttttacattagacgagataaagattgaatctatgtttataagtggaagtattcctcatcttacaaggtgatt |
124 |
Q |
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| T |
52789244 |
gcatgaaactatgaagtattgttaagagtttcacattagacgagataaagattgaatctatgtttataagtggaagtattcctcatcttacaaggtgatt |
52789343 |
T |
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| Q |
125 |
tgtaataataagttaggttcaatccaaattctaagataatagcagagcttatccaagatttgtcatgtctatctaatattaggcataagtcaacc |
219 |
Q |
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| T |
52789344 |
tgtaatattaagttaggttcaacccaaattctaagataatagcagagcctatccaaaatttgtcatgtctatctaatattaggcataagtcaacc |
52789438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 290 - 493
Target Start/End: Original strand, 52783175 - 52783356
Alignment:
| Q |
290 |
cttgaaagtgtaactcgttgtcacattgatctctaactcagagaaaacaccaattaaattatccaatcttcactcttttagtcactttagttactcatga |
389 |
Q |
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| T |
52783175 |
cttgaaagtgtaactcgttattacattgatctctaactcagagaaaacaccaattaaattatccaatcttcactcttttagtcactttagttactcatga |
52783274 |
T |
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| Q |
390 |
taaatagtgacgttaactaggtcnnnnnnntgggttggcggctattgaaaagtcaaacatgttcatgtgtaaagaagaaaccaaaatgaaagaaaatgaa |
489 |
Q |
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| T |
52783275 |
taaatagtgacgt----------------------tggcggctattgaaaagtcaaatatgttcatgtgtaaagaagaaaccaaaatgaaagaaaatcaa |
52783352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 290 - 493
Target Start/End: Original strand, 52789439 - 52789620
Alignment:
| Q |
290 |
cttgaaagtgtaactcgttgtcacattgatctctaactcagagaaaacaccaattaaattatccaatcttcactcttttagtcactttagttactcatga |
389 |
Q |
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| T |
52789439 |
cttgaaagtgtaactcgttattacattgatctctaactcagagaaaacaccaattaaattatccaatcttcactcttttagtcactttagttactcatga |
52789538 |
T |
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| Q |
390 |
taaatagtgacgttaactaggtcnnnnnnntgggttggcggctattgaaaagtcaaacatgttcatgtgtaaagaagaaaccaaaatgaaagaaaatgaa |
489 |
Q |
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| T |
52789539 |
taaatagtgacgt----------------------tggcggctattgaaaagtcaaatatgttcatgtgtaaagaagaaaccaaaatgaaagaaaatcaa |
52789616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 6740446 - 6740496
Alignment:
| Q |
137 |
ttaggttcaatccaaattctaagataatagcagagcttatccaagatttgt |
187 |
Q |
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| T |
6740446 |
ttaggctcaatccaaattccaagatagtagcagagcttatccaaaatttgt |
6740496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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