View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18469_low_7 (Length: 470)
Name: NF18469_low_7
Description: NF18469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18469_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 9 - 455
Target Start/End: Complemental strand, 12912108 - 12911662
Alignment:
| Q |
9 |
ttatactaatagcatgattatcctttttgaaaatttcttgtacagttcattcatctctgaagtaaaatttttgtttgcttatgctgtttgacttgtgcaa |
108 |
Q |
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| T |
12912108 |
ttatactgatagcatgattatcctttttgaaaatttcttgtacagttcattcatctctgaagtaaaaattctgtttgcttatgctgtttgacttgtgcaa |
12912009 |
T |
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| Q |
109 |
tcccatttcaggtatagtaatattgaggaggaggtgttgactgttgatgtaaaagctggatggaaaaaagggacaaaggttactttcaacgagaagggtg |
208 |
Q |
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| T |
12912008 |
tcccatttcaggtatagtaatattgaggaggaggtgttgactgttgatgtaaaagctggatggaaaaaagggacaaaggttactttcaacgagaagggtg |
12911909 |
T |
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| Q |
209 |
acaagaaacctggtatcatcccagctgatattgtttttgtgatcggagagaaaccacacgctcgttatactaggaatggaaatgatcttgtgattacaga |
308 |
Q |
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| T |
12911908 |
acaagaaacctggcatcatcccagctgatattgtttttgtgatcggagagaaaccacacgctcgttatactaggaatggaaatgatcttgtgattacaga |
12911809 |
T |
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| Q |
309 |
aaagataactgtggcggatgctctcacaaataaaacattggaaatccctgctttggatgggaggagtcttttgatccagttgccaaatgtagtcacacct |
408 |
Q |
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| T |
12911808 |
aaagataactgtggcggatgctctcacaaataaaacattggaaatccctgctttggatgggaggagtcttttgatccagttgccaaatgtagtcacacct |
12911709 |
T |
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| Q |
409 |
gactatgagcacaaagtccccaatgaagggatgccaataaccaaaca |
455 |
Q |
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| T |
12911708 |
gactatgagcacaaagtccccaatgaagggatgccaataaccaaaca |
12911662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 318
Target Start/End: Complemental strand, 12690609 - 12690547
Alignment:
| Q |
256 |
gagaaaccacacgctcgttatactaggaatggaaatgatcttgtgattacagaaaagataact |
318 |
Q |
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| T |
12690609 |
gagaaaccacacactctatatactaggaatggagatgatcttttgattcaacaaaagataact |
12690547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 318
Target Start/End: Complemental strand, 2132611 - 2132549
Alignment:
| Q |
256 |
gagaaaccacacgctcgttatactaggaatggaaatgatcttgtgattacagaaaagataact |
318 |
Q |
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| T |
2132611 |
gagaaaccacacactctttatactaggaattgaaatgatattttgattgaacaaaagataact |
2132549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 318
Target Start/End: Original strand, 2132293 - 2132373
Alignment:
| Q |
238 |
attgtttttgtgatcggagagaaaccacacgctcgttatactaggaatggaaatgatcttgtgattacagaaaagataact |
318 |
Q |
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| T |
2132293 |
attgtatttgtgattgctgagaaaccacatgctctttatactatgaatgaaaatgatattttgattgaacaaaagataact |
2132373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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