View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18469_low_8 (Length: 428)
Name: NF18469_low_8
Description: NF18469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18469_low_8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 8 - 428
Target Start/End: Complemental strand, 16560596 - 16560183
Alignment:
| Q |
8 |
cgaagaatatgcacttcattatttcttatatcttaaagagaagacaattgttgcgcagacaagattatttctcgagggatctaaagtaatggttttgttt |
107 |
Q |
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| T |
16560596 |
cgaaaaatatgcacttcattatttctcatatcttga-gagaagacaattgttgcgcagacaagattatttctcgtgggatctaaagtaatggttttgttt |
16560498 |
T |
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| Q |
108 |
ggtggattcaatctcttc--gtgttttagattttgttaaccgaaataggtcggagcttccaggattatcatttatgttgatgtttttcaagggcttgaac |
205 |
Q |
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| T |
16560497 |
ggtggattcaatctcttcttgtgttttagattttgttaaccaaaataggtcggagcttccaggattatcatttatgttgatgtttttcaagggcttgaac |
16560398 |
T |
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| Q |
206 |
ttctatttactatgcaatatctttttcttcgccaatgttttacccctttaagtattttggttagacgtttaatgagacagatgttattaaagtccttggc |
305 |
Q |
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| T |
16560397 |
ttctatttactatgcaatatctttttcttcgccaatattttatccctttaag---------tagacgtttaatgagacagatgttattaaagtccttggc |
16560307 |
T |
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| Q |
306 |
tgtttactttgggttttggcctagtcgcgtaatgttattctctacttttattttgaat-nnnnnnnnttaatcaatgatttactaggatgttgttgttga |
404 |
Q |
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| T |
16560306 |
tgtttactttgggttttggcctagtcgcgtaatgttatcctctacttttattttgaataaaaaaaaattaatcaatgatttactaggatgttgttgttga |
16560207 |
T |
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| Q |
405 |
attatgcttttcattagaaaatct |
428 |
Q |
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| T |
16560206 |
attatccttttcattagaaaatct |
16560183 |
T |
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