View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1846_high_4 (Length: 304)
Name: NF1846_high_4
Description: NF1846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1846_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 292
Target Start/End: Complemental strand, 48764787 - 48764503
Alignment:
| Q |
8 |
agagatgaacccatttggaatttcaccagaaaaatagttacttttcaaagaaacaacggttagattctgtagagaagtgaggttttttgggactgaccca |
107 |
Q |
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| T |
48764787 |
agagttgaacccatttggaatttcaccagaaaaatagttacttttcaaagaaacaacggttagattctgtagagaagtgaggttttttgggactgaccca |
48764688 |
T |
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| Q |
108 |
acaaaggcattgtcagaaaggtttagactttgaaggtttgtggataaaccaatcaactcaggtagcttacctgagattttattgttggagagtgaaagga |
207 |
Q |
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| T |
48764687 |
acaaaggcattgtcagaaaggtttagactttgaaggtttgtggataaaccaatcaactcaggtagcttacctgagattttattgttggagagtgaaagga |
48764588 |
T |
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| Q |
208 |
attgtagttgagaagagttgaagatagagttaggtaatgaaccattgaggaaattgtctgagagatcaatgtgatgaaggttttg |
292 |
Q |
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| T |
48764587 |
attgtagttgagaagagttgaagatagagttaggtaatgaaccattgaggaaattgtctgagagatcaatgtgatgaaggttttg |
48764503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 48526970 - 48527040
Alignment:
| Q |
223 |
agttgaagatagagttag-gtaatgaaccattgaggaaattgtctgagagatcaatgtgatgaaggttttg |
292 |
Q |
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| T |
48526970 |
agttgaagatagagtttttgtaatgaaccgttgaggaatttgtttgagagatcaatgtgatgagggttttg |
48527040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 48526893 - 48526941
Alignment:
| Q |
136 |
tttgaaggtttgtggataaaccaatcaactcaggtagcttacctgagat |
184 |
Q |
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||||||||||| | |||||||||||||| ||| |||| ||||||||||| |
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| T |
48526893 |
tttgaaggtttattgataaaccaatcaagtcaagtagtttacctgagat |
48526941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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