View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1846_high_7 (Length: 274)
Name: NF1846_high_7
Description: NF1846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1846_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 7 - 167
Target Start/End: Original strand, 53556801 - 53556965
Alignment:
| Q |
7 |
gaagcaaaggaaagggtgaggtgtgcaagactttttgtccttttaagcatcacatcagccattcttcttacctataaatcattctcttccttccaagtag |
106 |
Q |
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| T |
53556801 |
gaagcaaaggaaagggtgaggtgtgcaagactttttgtccttttaagcatcacatcagccattcttcttacctataaatcattctcttccttccaagtag |
53556900 |
T |
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| Q |
107 |
tttcccaacaatcttacaaagc---catcatcatcatctcaaggagag-aattaaacctaatttc |
167 |
Q |
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| T |
53556901 |
tttcccaacaatcttacaaagccatcatcatcatcatctcaaggagagaaattaaacctaatttc |
53556965 |
T |
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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 31981793 - 31981725
Alignment:
| Q |
186 |
aaggaaaacctgttgatggaagtaggaatggtttccatgaggaggaattggagtgatgagagaaatttcttt |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31981793 |
aaggaaaacctgttgatggaagtaggaatggtttccatg---aggaattggagtgatgagagaaatttcttt |
31981725 |
T |
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