View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1846_low_12 (Length: 224)

Name: NF1846_low_12
Description: NF1846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1846_low_12
NF1846_low_12
[»] chr5 (3 HSPs)
chr5 (43-178)||(25663510-25663645)
chr5 (133-207)||(25663634-25663708)
chr5 (130-183)||(19412273-19412326)
[»] chr6 (4 HSPs)
chr6 (27-158)||(16174071-16174202)
chr6 (133-175)||(7208214-7208256)
chr6 (134-175)||(29974337-29974378)
chr6 (129-169)||(7227171-7227211)
[»] chr1 (5 HSPs)
chr1 (126-175)||(17775302-17775351)
chr1 (89-175)||(10014657-10014744)
chr1 (129-183)||(11343590-11343644)
chr1 (129-183)||(11501610-11501664)
chr1 (121-159)||(34483505-34483543)
[»] scaffold0636 (1 HSPs)
scaffold0636 (91-159)||(6346-6414)
[»] chr3 (1 HSPs)
chr3 (121-171)||(17628078-17628128)
[»] chr8 (3 HSPs)
chr8 (130-175)||(17746967-17747012)
chr8 (121-156)||(33137757-33137792)
chr8 (129-175)||(11433119-11433165)
[»] chr4 (1 HSPs)
chr4 (89-175)||(25165623-25165710)
[»] chr7 (2 HSPs)
chr7 (121-175)||(1072111-1072165)
chr7 (121-153)||(7954871-7954903)


Alignment Details
Target: chr5 (Bit Score: 120; Significance: 1e-61; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 43 - 178
Target Start/End: Original strand, 25663510 - 25663645
Alignment:
Q  43 tttgtagtatccttttcgaaagaagactcgaagaaacttatcggagaacaacacatatcaaaagcaatttggtctttttgtttaattaagtttgttatca 142  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||    
T  25663510 tttgtagtatccttttcgaaagaagactcgaagaaacttattggagaacagcacatattagaagcaatttggtctttttgtttaattaagtttgttatca 25663609  T
Q  143 ttaaaacatcaacttaaaaaggattttgtgattatt 178  Q
    ||||||||||||||||||||||||||||||||||||    
T  25663610 ttaaaacatcaacttaaaaaggattttgtgattatt 25663645  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 207
Target Start/End: Original strand, 25663634 - 25663708
Alignment:
Q  133 tttgttatcattaaaacatcaacttaaaaaggattttgtgattattctcaatagagcatacttttcttcttgcct 207  Q
    ||||| || |||||||||||||||||  || |||| ||| |||||||||||||||||||||| ||||||||||||    
T  25663634 tttgtgattattaaaacatcaacttatgaaagattatgtaattattctcaatagagcatactcttcttcttgcct 25663708  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 19412273 - 19412326
Alignment:
Q  130 aagtttgttatcattaaaacatcaacttaaaaaggattttgtgattattctcaa 183  Q
    |||||||||||| |||||||||||| |||| ||||||||| ||||| |||||||    
T  19412273 aagtttgttatccttaaaacatcaatttaagaaggattttatgatttttctcaa 19412326  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 16174071 - 16174202
Alignment:
Q  27 atatttccattgtgcatttgtagtatccttttcgaaagaagactcgaagaaacttatcggagaacaacacatatcaaaagcaatttggtctttttgttta 126  Q
    |||||| |||||||| |||||| |||| | ||| |||||| |||| ||||||||| |  || | |||||||||||| || || |||| ||||| |||| |    
T  16174071 atatttacattgtgcttttgtaatatcatattctaaagaacactcaaagaaacttgttagaaatcaacacatatcataatcattttgatctttatgttca 16174170  T
Q  127 attaagtttgttatcattaaaacatcaactta 158  Q
    ||||||||| ||||||||||||||||||||||    
T  16174171 attaagttttttatcattaaaacatcaactta 16174202  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 7208256 - 7208214
Alignment:
Q  133 tttgttatcattaaaacatcaacttaaaaaggattttgtgatt 175  Q
    |||||||||||||||| |||||||||| ||| |||||||||||    
T  7208256 tttgttatcattaaaaaatcaacttaagaagaattttgtgatt 7208214  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 29974378 - 29974337
Alignment:
Q  134 ttgttatcattaaaacatcaacttaaaaaggattttgtgatt 175  Q
    ||||||||| |||||||||||||||| ||||||| |||||||    
T  29974378 ttgttatcactaaaacatcaacttaagaaggattatgtgatt 29974337  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 7227211 - 7227171
Alignment:
Q  129 taagtttgttatcattaaaacatcaacttaaaaaggatttt 169  Q
    |||||||||||||||||||| |||||||||| ||| |||||    
T  7227211 taagtttgttatcattaaaaaatcaacttaagaagaatttt 7227171  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 17775351 - 17775302
Alignment:
Q  126 aattaagtttgttatcattaaaacatcaacttaaaaaggattttgtgatt 175  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  17775351 aattaagtttgttatcagtaaaacatcaacttaagaaggattttgtgatt 17775302  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 175
Target Start/End: Original strand, 10014657 - 10014744
Alignment:
Q  89 aacaacacatatcaaaagcaatttggtctttttgttt-aattaagtttgttatcattaaaacatcaacttaaaaaggattttgtgatt 175  Q
    |||||||| | ||| || ||||||| ||| ||| ||| ||| ||||||||||||||||||| | |||||||| |||||||||||||||    
T  10014657 aacaacacttttcataatcaatttgatctatttatttcaatgaagtttgttatcattaaaataccaacttaagaaggattttgtgatt 10014744  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 11343590 - 11343644
Alignment:
Q  129 taagtttgttatcattaaaacatcaacttaaaaaggattttgtgattattctcaa 183  Q
    |||||||||| || |||||||||||| |||| || |||||||||||||| |||||    
T  11343590 taagtttgttgtcgttaaaacatcaatttaagaaagattttgtgattatcctcaa 11343644  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 11501610 - 11501664
Alignment:
Q  129 taagtttgttatcattaaaacatcaacttaaaaaggattttgtgattattctcaa 183  Q
    |||||||||| || |||||||||||| |||| || |||||||||||||| |||||    
T  11501610 taagtttgttgtcgttaaaacatcaatttaagaaagattttgtgattatcctcaa 11501664  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 159
Target Start/End: Original strand, 34483505 - 34483543
Alignment:
Q  121 tgtttaattaagtttgttatcattaaaacatcaacttaa 159  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  34483505 tgttcaattaagtttgttgtcattaaaacatcaacttaa 34483543  T

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Target: scaffold0636 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 6414 - 6346
Alignment:
Q  91 caacacatatcaaaagcaatttggtctttttgtttaattaagtttgttatcattaaaacatcaacttaa 159  Q
    ||||||||||||||| |||||||  || |||||| |||| ||||||| |||||||||||||||| ||||    
T  6414 caacacatatcaaaatcaatttgacctctttgttcaattgagtttgtaatcattaaaacatcaatttaa 6346  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 17628128 - 17628078
Alignment:
Q  121 tgtttaattaagtttgttatcattaaaacatcaacttaaaaaggattttgt 171  Q
    |||| ||||||||||| ||||||||||| |||||||||| |||||||||||    
T  17628128 tgttcaattaagtttgctatcattaaaatatcaacttaagaaggattttgt 17628078  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 17747012 - 17746967
Alignment:
Q  130 aagtttgttatcattaaaacatcaacttaaaaaggattttgtgatt 175  Q
    ||||||||||||||| |||||||||||||| ||| |||||||||||    
T  17747012 aagtttgttatcattgaaacatcaacttaagaagaattttgtgatt 17746967  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 156
Target Start/End: Complemental strand, 33137792 - 33137757
Alignment:
Q  121 tgtttaattaagtttgttatcattaaaacatcaact 156  Q
    ||||||||||||||||||||||||||||||| ||||    
T  33137792 tgtttaattaagtttgttatcattaaaacattaact 33137757  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 11433165 - 11433119
Alignment:
Q  129 taagtttgttatcattaaaacatcaacttaaaaaggattttgtgatt 175  Q
    |||||||||| ||||||||||||||| |||| | |||||||||||||    
T  11433165 taagtttgttgtcattaaaacatcaagttaagacggattttgtgatt 11433119  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 175
Target Start/End: Original strand, 25165623 - 25165710
Alignment:
Q  89 aacaacacatatcaaaagcaatttggtctttttgttt-aattaagtttgttatcattaaaacatcaacttaaaaaggattttgtgatt 175  Q
    ||||||||||||||||| ||  ||| ||| ||||||| ||| ||||||| |||||||||| |||| | |||| |||||||||| ||||    
T  25165623 aacaacacatatcaaaatcatattgatctctttgtttcaatgaagtttgctatcattaaagcatccatttaagaaggattttgggatt 25165710  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 1072165 - 1072111
Alignment:
Q  121 tgtttaattaagtttgttatcattaaaacatcaacttaaaaaggattttgtgatt 175  Q
    |||| |||||||||||||||||||||||||||| ||| | |||||| || |||||    
T  1072165 tgttgaattaagtttgttatcattaaaacatcaccttgagaaggatattttgatt 1072111  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 7954903 - 7954871
Alignment:
Q  121 tgtttaattaagtttgttatcattaaaacatca 153  Q
    |||| ||||||||||||||||||||||||||||    
T  7954903 tgttcaattaagtttgttatcattaaaacatca 7954871  T

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