View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1846_low_14 (Length: 212)
Name: NF1846_low_14
Description: NF1846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1846_low_14 |
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| [»] chr4 (9 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 3934983 - 3935194
Alignment:
| Q |
1 |
ttctggctctacccgaccttcctgtatcagttgaaatcctggatttaagttctagtaacattgagatcataccttcaagcatcaagaatcttacgaggct |
100 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3934983 |
ttctggctctacccgagcttcctttatcagttgaaatcctggatttaagaagttgtaacattgagatcataccttcaagcatcaagaatcttacgaggct |
3935082 |
T |
|
| Q |
101 |
aagagaactagacatacaattttccaacaagcttctggctctacctgagctttcttcatcagttgaaattctacttgttgactgtgactcactaaagact |
200 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||| || |
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| T |
3935083 |
aagaaaactagacatacgattttccaacaagcttctggctctacccgagctttcttcatcagttgaaattctacttgttcactgtgactcactgaagtct |
3935182 |
T |
|
| Q |
201 |
gtattgttccct |
212 |
Q |
| |
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|||||||||||| |
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| T |
3935183 |
gtattgttccct |
3935194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 60 - 212
Target Start/End: Original strand, 3921691 - 3921846
Alignment:
| Q |
60 |
attgagatcataccttcaagcatcaagaatcttacgaggctaagagaactagacatacaattttccaacaagcttctggctctacctgagctttcttcat |
159 |
Q |
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||||||| ||||| ||||||||||||||||||||| || |||||| || || |||||| |||||||||||||||||||| |||||| |||||| |||||| |
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| T |
3921691 |
attgagagcatacattcaagcatcaagaatcttacaagactaagaaaattatacatacgattttccaacaagcttctggttctacccgagcttccttcat |
3921790 |
T |
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| Q |
160 |
cagttgaaattctacttgttg---actgtgactcactaaagactgtattgttccct |
212 |
Q |
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| T |
3921791 |
cagttgaaagtctacttgttgacaactgtgaatcactaaagactgtattgttccct |
3921846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 60 - 212
Target Start/End: Complemental strand, 4023540 - 4023388
Alignment:
| Q |
60 |
attgagatcataccttcaagcatcaagaatcttacgaggctaagagaactagacatacaattttccaacaagcttctggctctacctgagctttcttcat |
159 |
Q |
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||||||| ||||||||||||||||||||||||||| || |||||| || ||||||||| ||||| | ||||| |||| |||||| |||||| |||||| |
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| T |
4023540 |
attgagagcataccttcaagcatcaagaatcttacaagactaagaaaattagacatacgattttgctcaaagctcctggttctacccgagcttccttcat |
4023441 |
T |
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| Q |
160 |
cagttgaaattctacttgttgactgtgactcactaaagactgtattgttccct |
212 |
Q |
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||||||||| |||||||||||| ||| ||||| |||||||||||||||||| |
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| T |
4023440 |
cagttgaaactctacttgttgaatgtagatcactgaagactgtattgttccct |
4023388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 212
Target Start/End: Complemental strand, 4000653 - 4000472
Alignment:
| Q |
31 |
ttgaaatcctggatttaagttctagtaacattgagatcataccttcaagcatcaagaatcttacgaggctaagagaactagacatacaattttccaacaa |
130 |
Q |
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|||||||||||| |||||| ||| | ||||||||||||||||| |||||| |||||||||| || |||||| || ||||||||| || || | || |
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| T |
4000653 |
ttgaaatcctggttttaagaaagagtgaaattgagatcataccttctagcatccagaatcttacaagactaagaaaattagacatacgatattgcttaaa |
4000554 |
T |
|
| Q |
131 |
gcttctggctctacctgagctttcttcatcagttgaaattctacttgttgactgtgactcactaaagactgtattgttccct |
212 |
Q |
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||||||||||||||||| |||| ||| ||||||||||| |||||||||||| ||| ||||| |||||||||||||||||| |
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| T |
4000553 |
gcttctggctctacctgtgcttcctttatcagttgaaactctacttgttgaatgtatatcactgaagactgtattgttccct |
4000472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 33 - 179
Target Start/End: Complemental strand, 3808534 - 3808388
Alignment:
| Q |
33 |
gaaatcctggatttaagttctagtaacattgagatcataccttcaagcatcaagaatcttacgaggctaagagaactagacatacaattttccaacaagc |
132 |
Q |
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|||| |||| ||||||||| | ||| ||||||| ||||||||||||||||||| ||||||| || |||||| || ||||||||||| || ||| |||| |
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| T |
3808534 |
gaaaccctgaatttaagttacactaaaattgagagcataccttcaagcatcaaggatcttacaagactaagaaaattagacatacaaggttgcaaaaagc |
3808435 |
T |
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| Q |
133 |
ttctggctctacctgagctttcttcatcagttgaaattctacttgtt |
179 |
Q |
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| T |
3808434 |
ttctgtctctacccgagcttccttcatcagttgaaactctacttgtt |
3808388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 60 - 212
Target Start/End: Original strand, 3957152 - 3957304
Alignment:
| Q |
60 |
attgagatcataccttcaagcatcaagaatcttacgaggctaagagaactagacatacaattttccaacaagcttctggctctacctgagctttcttcat |
159 |
Q |
| |
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||||||| |||||| || |||||||||||||| || || |||||| || ||||||||| ||||| | |||||| |||||||||| |||||| |||||| |
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| T |
3957152 |
attgagagcataccgtcgagcatcaagaatctcacaagactaagaaaattagacatacgattttgctcaaagcttgtggctctacccgagcttccttcat |
3957251 |
T |
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| Q |
160 |
cagttgaaattctacttgttgactgtgactcactaaagactgtattgttccct |
212 |
Q |
| |
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||||||||| |||||||||||| ||||| ||| | ||||||||||| |||||| |
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| T |
3957252 |
cagttgaaactctacttgttgaatgtgaatcattgaagactgtatttttccct |
3957304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 60 - 179
Target Start/End: Complemental strand, 3816081 - 3815962
Alignment:
| Q |
60 |
attgagatcataccttcaagcatcaagaatcttacgaggctaagagaactagacatacaattttccaacaagcttctggctctacctgagctttcttcat |
159 |
Q |
| |
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||||||||||||||||||||||||||||||||||| || |||||| |||||||||||| | || | |||||| ||||| |||| |||||| |||||| |
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| T |
3816081 |
attgagatcataccttcaagcatcaagaatcttacaagactaagaaaactagacatacgaggttgcttgaagcttgtggctttacccgagcttccttcat |
3815982 |
T |
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| Q |
160 |
cagttgaaattctacttgtt |
179 |
Q |
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||||||||| |||||||||| |
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| T |
3815981 |
cagttgaaactctacttgtt |
3815962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 60 - 212
Target Start/End: Complemental strand, 3985464 - 3985312
Alignment:
| Q |
60 |
attgagatcataccttcaagcatcaagaatcttacgaggctaagagaactagacatacaattttccaacaagcttctggctctacctgagctttcttcat |
159 |
Q |
| |
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||||||| ||||||||||||||||||| ||||||| || |||||| || |||||||| || | ||||||||||||||||||||||| | |||| |
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| T |
3985464 |
attgagagcataccttcaagcatcaaggatcttacaagactaagaaaattagacataagcgattgctcggagcttctggctctacctgagcttccatcat |
3985365 |
T |
|
| Q |
160 |
cagttgaaattctacttgttgactgtgactcactaaagactgtattgttccct |
212 |
Q |
| |
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|| |||||| ||||||||||||||||| ||||| ||| ||||||| |||||| |
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| T |
3985364 |
cacttgaaactctacttgttgactgtgtgtcactgaagtctgtatttttccct |
3985312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 3934910 - 3935019
Alignment:
| Q |
60 |
attgagatcataccttcaagcatcaagaatcttacgaggctaagagaactagacatacaattttccaacaagcttctggctctacctgagctttcttcat |
159 |
Q |
| |
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||||||| ||||||||||||||||||| ||||||| || |||||| || || ||||| || ||| ||||||||||||||||| |||||| ||| || |
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| T |
3934910 |
attgagagcataccttcaagcatcaaggatcttacaagactaagaaaattaaacatatgcggttgcaaaaagcttctggctctacccgagcttcctttat |
3935009 |
T |
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| Q |
160 |
cagttgaaat |
169 |
Q |
| |
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|||||||||| |
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| T |
3935010 |
cagttgaaat |
3935019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 60 - 212
Target Start/End: Complemental strand, 13396310 - 13396158
Alignment:
| Q |
60 |
attgagatcataccttcaagcatcaagaatcttacgaggctaagagaactagacatacaattttccaacaagcttctggctctacctgagctttcttcat |
159 |
Q |
| |
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||||||| |||||||||||||||| |||||||| | | ||||| ||||||||||||||| | | |||||||||||| |||||| |||| |||||| |
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| T |
13396310 |
attgagagtataccttcaagcatcatcaatcttacacgacgaagagtactagacatacaattctgctcaaagcttctggctgtacctgtgcttccttcat |
13396211 |
T |
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| Q |
160 |
cagttgaaattctacttgttgactgtgactcactaaagactgtattgttccct |
212 |
Q |
| |
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|| |||||| |||| ||||||| ||| | ||||| ||| ||||| |||||||| |
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| T |
13396210 |
cacttgaaactctaattgttgaatgtaagtcactgaagtctgtagtgttccct |
13396158 |
T |
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