View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1846_low_2 (Length: 458)
Name: NF1846_low_2
Description: NF1846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1846_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 129 - 453
Target Start/End: Complemental strand, 9882838 - 9882514
Alignment:
| Q |
129 |
taagattgaagatttgttcaatgcatcttttaccttacaatagcatgagagtatgttggatattaatgtttagtctcttgttgccttggtttcttttatg |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9882838 |
taagattgaagatttgttcaatgcatcttttaccttacaattgcatgagagtatgttggatattaatgtttagtctcttgttgccttggtttcttttatg |
9882739 |
T |
|
| Q |
229 |
ggctcaaatttgtggaactgagtgtgtgttgaaatttagatatttaagctgttagttcagctagccctgaggatgtagtagccattcccacaagtgggta |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9882738 |
ggctcaaatttgtggaactgagtgtgtgttgaaatttagatatttaagctgttagttcagctagccctgaggatgtagtagccattcccacaagtgggta |
9882639 |
T |
|
| Q |
329 |
gaattgcatattctaattctcctcgtcctccttctccggattttgagtgtcttcgtgacatagcctatatctctatacccgttatttccttgtagatagt |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9882638 |
gaattgcatattctaattctcctcgtcctccttctccggattttgagtgtcttcgtgacatagcctatatctctatacccgttatttccttgtagatagt |
9882539 |
T |
|
| Q |
429 |
tccctgacttagcttctgtgctcct |
453 |
Q |
| |
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||||||||||||||| |||| |||| |
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| T |
9882538 |
tccctgacttagcttttgtgttcct |
9882514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 9882998 - 9882866
Alignment:
| Q |
1 |
cagtagatgtgatgtagtctgtgtgtgtttgatgagtgatttttgttcttgtagaaaaacgagcaagaagtgtatgcaagtaaatctcacaagcgacatg |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9882998 |
cagtagatgtgatgtagtctgtgtatgtttgatgagtgatttttgttcttgtagaaaaacgagcaagaagtgtatgcaagtaaatctcacaagcgacatg |
9882899 |
T |
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| Q |
101 |
tgataaagtacaaaaaccatcattcggttaaga |
133 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
9882898 |
tgataaagtacaaaaaccatcattcggttaaga |
9882866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 129 - 443
Target Start/End: Original strand, 20423635 - 20423950
Alignment:
| Q |
129 |
taagattgaagatttgttcaatgcatcttttaccttacaatagcatgagagtatg-ttggatattaatgtttagtctcttgttgccttggtttcttttat |
227 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20423635 |
taagattgaagatttgttcaatgcatcttttaccttacaattgcatgagagtatggttggatattaatgtttagtctcttgttgccttggtttcttttat |
20423734 |
T |
|
| Q |
228 |
gggctcaaatttgtggaactgagtgtgtgttgaaatttagatatttaagctgttagttcagctagccctgaggatgtagtagccattcccacaagtgggt |
327 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
20423735 |
gggctcaaatttgtggaactgagtgagtgttgaaatttagatatttaagctgttagttcagctagcccttaggatgtagtagccattcccacaagtgggt |
20423834 |
T |
|
| Q |
328 |
agaattgcatattctaattctcctcgtcctccttctccggattttgagtgtcttcgtgacatagcctatatctctatacccgttatttccttgtagatag |
427 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20423835 |
agaattgcatattctaattctcctcctcctccttctccggattttgagtgtcttcatgacatagcctatatctctatacccgttatttccttgtagatag |
20423934 |
T |
|
| Q |
428 |
ttccctgacttagctt |
443 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
20423935 |
ttccctgacttagctt |
20423950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 20423478 - 20423597
Alignment:
| Q |
1 |
cagtagatgtgatgtagtctgtgtgtgtttgatgagtgatttttgttcttgtagaaaaacgagcaagaagtgtatgcaagtaaatctcacaagcgacatg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20423478 |
cagtagatgtgatgtagtctgtgtgtgtttgatgagtgatttttgttcttgtagaaaaacgagcaagaagtgtatgcatgtaaatctcacaagcgacatg |
20423577 |
T |
|
| Q |
101 |
tgataaagtacaaaaaccat |
120 |
Q |
| |
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||||||||||| |||||||| |
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|
| T |
20423578 |
tgataaagtacgaaaaccat |
20423597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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