View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1846_low_8 (Length: 262)

Name: NF1846_low_8
Description: NF1846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1846_low_8
NF1846_low_8
[»] chr2 (2 HSPs)
chr2 (1-247)||(43131583-43131828)
chr2 (181-248)||(36766699-36766769)
[»] chr1 (5 HSPs)
chr1 (181-248)||(35873494-35873561)
chr1 (193-247)||(27542-27596)
chr1 (184-247)||(39238875-39238938)
chr1 (193-247)||(31160770-31160824)
chr1 (193-234)||(35876806-35876847)
[»] chr6 (1 HSPs)
chr6 (193-246)||(2613367-2613420)
[»] chr7 (3 HSPs)
chr7 (193-248)||(8656338-8656393)
chr7 (193-246)||(25780245-25780298)
chr7 (193-245)||(39386951-39387003)
[»] scaffold0299 (1 HSPs)
scaffold0299 (193-247)||(18031-18085)
[»] chr8 (5 HSPs)
chr8 (193-247)||(4989739-4989793)
chr8 (193-247)||(33621410-33621464)
chr8 (193-247)||(34678222-34678276)
chr8 (193-247)||(40607342-40607396)
chr8 (193-246)||(10451944-10451997)
[»] chr5 (2 HSPs)
chr5 (193-247)||(6102872-6102926)
chr5 (193-247)||(12036323-12036377)
[»] chr4 (2 HSPs)
chr4 (193-247)||(53142825-53142879)
chr4 (194-247)||(32325068-32325121)
[»] chr3 (1 HSPs)
chr3 (193-246)||(34228273-34228326)


Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 43131583 - 43131828
Alignment:
Q  1 tgagttaaacatggagaaaattggcacagctgctttattcggacttgagtgttatctttggtattgtgggggtgagatagttggcagaggatttacattc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  43131583 tgagttaaacatggagaaaattggcacagctgctttattcggacttgagtgttatctttggtattgtgggggtgagatagttggcagaggatttacattt 43131682  T
Q  101 actggctactatgtttaagtggagtggaactatccaataagacattactgctgctagtttaagggtcttgctactagttaaaagaatccttgaataaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43131683 actggctactatgtttaagtggagtggaactatccaataagacattactgctgctagtttaagggtcttgctactagtt-aaagaatccttgaataaaaa 43131781  T
Q  201 atttgtcttaaaaatgtaagtttatacttttgatcaagtaataatta 247  Q
     ||||||||||||||||||||||||||||||||||||||||||||||    
T  43131782 ttttgtcttaaaaatgtaagtttatacttttgatcaagtaataatta 43131828  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 36766699 - 36766769
Alignment:
Q  181 aaagaatccttgaataaaaaatttgtcttaaaaatgt---aagtttatacttttgatcaagtaataattat 248  Q
    ||||||||| ||||||||||||||||||| |||||||   |||||  ||||||||||||||||||| ||||    
T  36766699 aaagaatccatgaataaaaaatttgtcttgaaaatgtaacaagttgttacttttgatcaagtaatatttat 36766769  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 35873561 - 35873494
Alignment:
Q  181 aaagaatccttgaataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattat 248  Q
    |||||||| || ||||||||||||||||| ||||||||| ||| ||||||| || |||||||||||||    
T  35873561 aaagaatctttaaataaaaaatttgtcttcaaaatgtaaatttttacttttcatgaagtaataattat 35873494  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 27596 - 27542
Alignment:
Q  193 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatta 247  Q
    ||||||||||||||||| ||||| |||||||  ||||||||| ||||||||||||    
T  27596 aataaaaaatttgtctttaaaatataagttttgacttttgattaagtaataatta 27542  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 39238938 - 39238875
Alignment:
Q  184 gaatccttgaataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatta 247  Q
    |||||| | |||||||| ||| |||||||||||||||||  ||| |||||||||||||| ||||    
T  39238938 gaatccataaataaaaattttctcttaaaaatgtaagttgttacatttgatcaagtaatgatta 39238875  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 31160824 - 31160770
Alignment:
Q  193 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatta 247  Q
    |||| |||||||||||||||||| ||| |||  ||||||||| ||||||||||||    
T  31160824 aatagaaaatttgtcttaaaaatataaattttgacttttgattaagtaataatta 31160770  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 35876847 - 35876806
Alignment:
Q  193 aataaaaaatttgtcttaaaaatgtaagtttatacttttgat 234  Q
    ||||||||||||||||||||||| |||||||  |||||||||    
T  35876847 aataaaaaatttgtcttaaaaatataagttttaacttttgat 35876806  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 2613367 - 2613420
Alignment:
Q  193 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatt 246  Q
    |||| ||| |||||||||||||| ||||||  ||||||||||||||||||||||    
T  2613367 aatagaaattttgtcttaaaaatataagttgctacttttgatcaagtaataatt 2613420  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 8656393 - 8656338
Alignment:
Q  193 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattat 248  Q
    |||| |||||||||||||||||  |||||||  ||||||||| |||||||||||||    
T  8656393 aatagaaaatttgtcttaaaaaaataagttttaacttttgattaagtaataattat 8656338  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 25780298 - 25780245
Alignment:
Q  193 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatt 246  Q
    |||||||||||||||| |||||| |||||||  |||||| || |||||||||||    
T  25780298 aataaaaaatttgtctgaaaaatataagttttgacttttaattaagtaataatt 25780245  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 39387003 - 39386951
Alignment:
Q  193 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataat 245  Q
    |||||||||||| || ||||||| ||| |||  ||||||||||||||||||||    
T  39387003 aataaaaaatttatcctaaaaatataaattttaacttttgatcaagtaataat 39386951  T

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Target: scaffold0299 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 18031 - 18085
Alignment:
Q  193 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatta 247  Q
    |||| ||||||| |||||||||| |||||||  ||||||||| ||||||||||||    
T  18031 aatagaaaatttatcttaaaaatataagttttgacttttgattaagtaataatta 18085  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 4989793 - 4989739
Alignment:
Q  193 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatta 247  Q
    ||||||||||||||||| ||||| |||||||  | |||||||||||||| |||||    
T  4989793 aataaaaaatttgtcttgaaaatataagttttgatttttgatcaagtaacaatta 4989739  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 33621464 - 33621410
Alignment:
Q  193 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatta 247  Q
    |||||||| |||||||||||||| |||  || |||||||||||||||||| ||||    
T  33621464 aataaaaattttgtcttaaaaatataaaattttacttttgatcaagtaattatta 33621410  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 34678222 - 34678276
Alignment:
Q  193 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatta 247  Q
    |||| |||||||||||| |||||||||  |  |||||||||||||||||||||||    
T  34678222 aatagaaaatttgtcttgaaaatgtaaaatgttacttttgatcaagtaataatta 34678276  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 40607396 - 40607342
Alignment:
Q  193 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatta 247  Q
    |||| ||||||| |||||||||| |||||||  ||||||||| ||||||||||||    
T  40607396 aatagaaaatttatcttaaaaatataagttttgacttttgattaagtaataatta 40607342  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 10451997 - 10451944
Alignment:
Q  193 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatt 246  Q
    |||||||| ||||| |||||||| |||||||  ||||||||| |||||||||||    
T  10451997 aataaaaattttgtattaaaaatataagttttgacttttgattaagtaataatt 10451944  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 6102926 - 6102872
Alignment:
Q  193 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatta 247  Q
    |||| |||||||||||| ||||| |||||||  ||||||||| ||||||||||||    
T  6102926 aatagaaaatttgtcttcaaaatataagttttgacttttgattaagtaataatta 6102872  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 12036323 - 12036377
Alignment:
Q  193 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatta 247  Q
    |||| |||||||||||| ||||| |||||||  ||||||||| ||||||||||||    
T  12036323 aatagaaaatttgtcttgaaaatataagttttgacttttgattaagtaataatta 12036377  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 53142879 - 53142825
Alignment:
Q  193 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatta 247  Q
    ||||||||||||||| | ||||| |||||||  ||||||||| ||||||||||||    
T  53142879 aataaaaaatttgtcatgaaaatataagttttaacttttgattaagtaataatta 53142825  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 32325121 - 32325068
Alignment:
Q  194 ataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatta 247  Q
    |||||||||||||||| ||||| ||| |||  ||||||||| ||||||||||||    
T  32325121 ataaaaaatttgtcttgaaaatataatttttgacttttgattaagtaataatta 32325068  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 34228273 - 34228326
Alignment:
Q  193 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatt 246  Q
    ||||||||||||||||||||||| ||| |||  ||||||||| || ||||||||    
T  34228273 aataaaaaatttgtcttaaaaatataaattttgacttttgattaaataataatt 34228326  T

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