View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1846_low_9 (Length: 255)

Name: NF1846_low_9
Description: NF1846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1846_low_9
NF1846_low_9
[»] chr8 (18 HSPs)
chr8 (1-142)||(31456686-31456827)
chr8 (143-244)||(4350763-4350864)
chr8 (143-237)||(34141960-34142054)
chr8 (176-244)||(26835686-26835754)
chr8 (176-234)||(9191169-9191227)
chr8 (182-244)||(13580450-13580512)
chr8 (143-232)||(22486699-22486787)
chr8 (181-236)||(38075786-38075840)
chr8 (186-244)||(7255379-7255437)
chr8 (143-237)||(22930257-22930351)
chr8 (182-237)||(28376631-28376687)
chr8 (144-237)||(13236100-13236194)
chr8 (169-226)||(21348504-21348561)
chr8 (195-244)||(39612709-39612758)
chr8 (208-244)||(12181824-12181860)
chr8 (208-244)||(12426252-12426288)
chr8 (64-120)||(23979070-23979126)
chr8 (192-232)||(43872463-43872503)
[»] chr4 (14 HSPs)
chr4 (139-237)||(23869979-23870077)
chr4 (147-235)||(55236220-55236309)
chr4 (145-237)||(3643244-3643334)
chr4 (142-237)||(29118406-29118501)
chr4 (168-237)||(6137165-6137234)
chr4 (178-244)||(12320374-12320441)
chr4 (194-236)||(7540513-7540555)
chr4 (142-237)||(7853230-7853325)
chr4 (146-237)||(36071656-36071747)
chr4 (207-244)||(38087659-38087696)
chr4 (194-238)||(25790450-25790494)
chr4 (195-235)||(35372204-35372243)
chr4 (194-238)||(47059677-47059721)
chr4 (194-238)||(47082081-47082125)
[»] chr6 (9 HSPs)
chr6 (157-244)||(10668970-10669057)
chr6 (144-237)||(12174257-12174350)
chr6 (157-232)||(13229257-13229332)
chr6 (142-234)||(35122053-35122145)
chr6 (171-234)||(33344760-33344823)
chr6 (194-233)||(34969383-34969422)
chr6 (183-237)||(4337990-4338044)
chr6 (207-245)||(6274022-6274060)
chr6 (194-234)||(13481670-13481710)
[»] chr1 (15 HSPs)
chr1 (146-237)||(1240366-1240457)
chr1 (142-237)||(23897994-23898089)
chr1 (143-237)||(23935124-23935218)
chr1 (168-230)||(35405285-35405346)
chr1 (144-236)||(10976216-10976308)
chr1 (143-237)||(8246819-8246911)
chr1 (146-232)||(22667683-22667769)
chr1 (145-238)||(45385334-45385427)
chr1 (204-244)||(35204307-35204347)
chr1 (1-45)||(49084554-49084598)
chr1 (144-234)||(34299057-34299147)
chr1 (157-238)||(1153822-1153903)
chr1 (170-234)||(40869-40933)
chr1 (146-238)||(3265563-3265655)
chr1 (181-237)||(29664165-29664221)
[»] chr7 (12 HSPs)
chr7 (143-237)||(15134550-15134644)
chr7 (169-234)||(30095862-30095927)
chr7 (143-226)||(21828097-21828180)
chr7 (182-237)||(35812589-35812644)
chr7 (182-244)||(21292822-21292884)
chr7 (188-245)||(26914434-26914490)
chr7 (181-244)||(3940743-3940806)
chr7 (194-230)||(36066100-36066136)
chr7 (148-244)||(40351860-40351956)
chr7 (194-237)||(49164865-49164908)
chr7 (205-245)||(31329678-31329718)
chr7 (194-234)||(37996496-37996536)
[»] chr2 (9 HSPs)
chr2 (145-228)||(16647942-16648025)
chr2 (143-234)||(37911368-37911459)
chr2 (143-237)||(5163728-5163822)
chr2 (176-244)||(17271355-17271423)
chr2 (167-237)||(34909438-34909508)
chr2 (194-244)||(40877017-40877067)
chr2 (177-237)||(4206661-4206720)
chr2 (187-235)||(34345878-34345926)
chr2 (207-237)||(28556704-28556734)
[»] chr5 (9 HSPs)
chr5 (176-237)||(7887286-7887347)
chr5 (144-237)||(20870571-20870664)
chr5 (143-237)||(3193621-3193715)
chr5 (143-239)||(18600128-18600224)
chr5 (176-237)||(39542379-39542440)
chr5 (185-237)||(12263747-12263799)
chr5 (194-238)||(32257783-32257827)
chr5 (204-244)||(502802-502841)
chr5 (142-218)||(23922444-23922520)
[»] chr3 (9 HSPs)
chr3 (143-244)||(15670854-15670955)
chr3 (142-237)||(11383527-11383621)
chr3 (182-236)||(33510197-33510252)
chr3 (194-236)||(54417122-54417164)
chr3 (198-245)||(18257977-18258024)
chr3 (194-237)||(27541167-27541210)
chr3 (143-232)||(52706765-52706854)
chr3 (204-236)||(17713273-17713305)
chr3 (204-236)||(19014502-19014534)
[»] scaffold0001 (1 HSPs)
scaffold0001 (142-242)||(64974-65072)
[»] scaffold0777 (1 HSPs)
scaffold0777 (146-237)||(5785-5875)


Alignment Details
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 31456686 - 31456827
Alignment:
Q  1 tggttctattgtggaagaactaaaattgtttctagttttgaatgttcttaagtataatcgaagaattggttctaacttaaaactaaaatctgtagttttt 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  31456686 tggttctattgtagaagaactaaaattgtttctagttttgaatgttcttaagtataatccaagaattggttctaacttaaaactaaaatctttagttttt 31456785  T
Q  101 tcttctccaattaatttttagatcagataaagaggttacatg 142  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  31456786 tcttctccaattaatttttagatcacataaagaggttacatg 31456827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 244
Target Start/End: Complemental strand, 4350864 - 4350763
Alignment:
Q  143 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagtataata 242  Q
    ||||||||||||| |||||||||  ||||||| | ||||| ||||||||  ||||||| | || ||||||||||||||||| |||||||||||||| |||    
T  4350864 caggggtggccctgagggcgggcacgaggggcggtagccctgggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtattata 4350765  T
Q  243 ta 244  Q
    ||    
T  4350764 ta 4350763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 237
Target Start/End: Original strand, 34141960 - 34142054
Alignment:
Q  143 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    ||||||||||||| ||||| |||  |||| || ||||||||||||||||  || |||||| || ||||| ||||||||||| |||||||||||||    
T  34141960 caggggtggccctgagggcaggcgcgaggagcggcagcccagggcaccactttgttaggggcaccaaaactattatttttatttagtagttagta 34142054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 26835754 - 26835686
Alignment:
Q  176 gcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagtataatata 244  Q
    ||||||||  ||||||| ||||||||| || ||||||||||||||||||||| ||||||||| ||||||    
T  26835754 gcagcccatagcaccatttttttaggggcaccaaaattattatttttacttaatagttagtacaatata 26835686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 9191169 - 9191227
Alignment:
Q  176 gcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagtta 234  Q
    |||||||||  |||||| ||||||||  |||||||||||||||||||||||||||||||    
T  9191169 gcagcccagaacaccatttttttaggagcatcaaaattattatttttacttagtagtta 9191227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 13580512 - 13580450
Alignment:
Q  182 cagggcaccatatttttagggccatcaaaattattatttttacttagtagttagtataatata 244  Q
    |||| |||||| ||||||||| || ||||||||||||||||||||| |||||||||| |||||    
T  13580512 caggacaccatttttttaggggcaccaaaattattatttttacttaatagttagtattatata 13580450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 22486787 - 22486699
Alignment:
Q  143 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagt 232  Q
    ||||||||||||| ||||| ||   ||||||| ||||||||||||| ||| |||||||||  | ||||||||||||| ||||||||||||    
T  22486787 caggggtggccctgagggcaggtgcgaggggcggcagcccagggcatcatttttttaggg-taccaaaattattattcttacttagtagt 22486699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 38075840 - 38075786
Alignment:
Q  181 ccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagt 236  Q
    ||||| |||||| ||||||||| |||||||||||||||||||||||||| ||||||    
T  38075840 ccaggacaccat-tttttagggacatcaaaattattatttttacttagttgttagt 38075786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 7255379 - 7255437
Alignment:
Q  186 gcaccatatttttagggccatcaaaattattatttttacttagtagttagtataatata 244  Q
    |||||||||||||| || ||| ||||||| |||||||||||||| |||||||| |||||    
T  7255379 gcaccatatttttaagggcattaaaattaatatttttacttagtggttagtattatata 7255437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 237
Target Start/End: Original strand, 22930257 - 22930351
Alignment:
Q  143 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    ||||||| | ||| |||||||||   ||||||  ||| |||||||||||| |||| |||| || ||||||||| ||||||||||| |||||||||    
T  22930257 caggggttgtcctgagggcgggcgcaaggggcgacagtccagggcaccattttttcaggggcaccaaaattataatttttacttaatagttagta 22930351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 28376631 - 28376687
Alignment:
Q  182 cagggcaccatattttt-agggccatcaaaattattatttttacttagtagttagta 237  Q
    ||||||||||| ||||| || | || |||||||||||||||||||||||||||||||    
T  28376631 cagggcaccattttttttagcggcaccaaaattattatttttacttagtagttagta 28376687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 13236100 - 13236194
Alignment:
Q  144 aggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattatta-tttttacttagtagttagta 237  Q
    ||||| || ||| |||| |||| ||||||||  || || ||||||||||  ||| |||| || ||||||||||| ||||||||||||||||||||    
T  13236100 aggggaggtcctgagggtgggcaggaggggcgacaacctagggcaccattgtttaaggggcaccaaaattattattttttacttagtagttagta 13236194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 21348561 - 21348504
Alignment:
Q  169 aggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttactt 226  Q
    |||||| ||||||||||||||||| ||| ||||| ||  |||||| ||||||||||||    
T  21348561 aggggcggcagcccagggcaccatttttgtaggggcactaaaattcttatttttactt 21348504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 39612758 - 39612709
Alignment:
Q  195 ttttagggccatcaaaattattatttttacttagtagttagtataatata 244  Q
    |||||||| ||| ||||| |||||||||||||| |||||||||| |||||    
T  39612758 ttttaggggcatgaaaatgattatttttacttactagttagtattatata 39612709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 12181824 - 12181860
Alignment:
Q  208 aaaattattatttttacttagtagttagtataatata 244  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  12181824 aaaattattatttttacttagtaattagtattatata 12181860  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 12426252 - 12426288
Alignment:
Q  208 aaaattattatttttacttagtagttagtataatata 244  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  12426252 aaaattattatttttacttagtaattagtattatata 12426288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 23979126 - 23979070
Alignment:
Q  64 aattggttctaacttaaaactaaaatctgtagttttttcttctccaattaattttta 120  Q
    ||||| || |||||||||||||||||||||||  |||  |||| |||||||||||||    
T  23979126 aattgattataacttaaaactaaaatctgtagcatttgattctacaattaattttta 23979070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 43872463 - 43872503
Alignment:
Q  192 tatttttagggccatcaaaattattatttttacttagtagt 232  Q
    ||||||||||| |||| | ||||||||||||||||||||||    
T  43872463 tatttttaggggcatccatattattatttttacttagtagt 43872503  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 139 - 237
Target Start/End: Original strand, 23869979 - 23870077
Alignment:
Q  139 catgcaggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    ||||||||||||||||| |||||||||  |||||||  |||||||||||||||  ||||||||| || |||||||||||||||||||||||||||||||    
T  23869979 catgcaggggtggccctgagggcgggctcgaggggcgacagcccagggcaccacttttttaggggcaccaaaattattatttttacttagtagttagta 23870077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 147 - 235
Target Start/End: Original strand, 55236220 - 55236309
Alignment:
Q  147 ggtggccctcagggcgggccggaggggcagcagcccagggcaccatattttt-agggccatcaaaattattatttttacttagtagttag 235  Q
    ||||||| | |||||||||  |||||||||||||||||| |||||| ||||| | || |||||||||||||||||||| |||||||||||    
T  55236220 ggtggccttgagggcgggcgcgaggggcagcagcccaggacaccattttttttaagggcatcaaaattattatttttatttagtagttag 55236309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 237
Target Start/End: Complemental strand, 3643334 - 3643244
Alignment:
Q  145 ggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    ||||||||||| |||| |||| |||||||| | |||||| |||||||| |||||| || |||||||||||||| |||||||||||||||||||    
T  3643334 ggggtggccctgagggtgggcaggaggggcggtagcccatggcaccat-tttttaaggacatcaaaattatta-ttttacttagtagttagta 3643244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 29118406 - 29118501
Alignment:
Q  142 gcaggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    |||||||||||||| |||||||||  ||||||  | ||| ||||||||||| ||| | ||| || |||||||||||||||||  ||||||||||||    
T  29118406 gcaggggtggccctgagggcgggctcgaggggtgggagctcagggcaccatttttattggggcaccaaaattattatttttatgtagtagttagta 29118501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 6137165 - 6137234
Alignment:
Q  168 gaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    ||||||| |||| ||||| |||||| ||||||||  ||| |||||||||||||||| |||||||||||||    
T  6137165 gaggggcggcagtccaggacaccatttttttaggagcattaaaattattatttttatttagtagttagta 6137234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 12320374 - 12320441
Alignment:
Q  178 agcccagggcaccatatttttagggccatcaaaattatta-tttttacttagtagttagtataatata 244  Q
    |||||| | ||||||  |||||||| ||| |||||||||| |||||||||||||||||||||||||||    
T  12320374 agcccatgacaccattattttaggggcatgaaaattattactttttacttagtagttagtataatata 12320441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 7540555 - 7540513
Alignment:
Q  194 tttttagggccatcaaaattattatttttacttagtagttagt 236  Q
    ||||||||| |||||||||||||||||||||||| ||||||||    
T  7540555 tttttaggggcatcaaaattattatttttacttattagttagt 7540513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 7853230 - 7853325
Alignment:
Q  142 gcaggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    |||||||||||||| |||| |||| |||| ||| ||| || |||||| |||  | |||  | || |||| ||||||||||||||||||||||||||    
T  7853230 gcaggggtggccctaagggtgggcgggagaggcggcaacctagggcatcattatcttacaggcaccaaatttattatttttacttagtagttagta 7853325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 36071747 - 36071656
Alignment:
Q  146 gggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    |||||||||  |||| |||| |||||||| |||| |||||  ||||| ||| ||||| ||  |||||||||||||||||||  |||||||||    
T  36071747 gggtggcccaaagggtgggcgggaggggcggcagtccaggttaccatttttctaggggcactaaaattattatttttacttgatagttagta 36071656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 38087659 - 38087696
Alignment:
Q  207 caaaattattatttttacttagtagttagtataatata 244  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  38087659 caaaattattatttttacttaatagttagtacaatata 38087696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 25790450 - 25790494
Alignment:
Q  194 tttttagggccatcaaaattattatttttacttagtagttagtat 238  Q
    ||||||||| || ||||||||||||||||| ||| ||||||||||    
T  25790450 tttttaggggcaccaaaattattatttttatttaatagttagtat 25790494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 35372243 - 35372204
Alignment:
Q  195 ttttagggccatcaaaattattatttttacttagtagttag 235  Q
    |||||||| ||||||| ||||||||||||||||||||||||    
T  35372243 ttttagggacatcaaa-ttattatttttacttagtagttag 35372204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 47059677 - 47059721
Alignment:
Q  194 tttttagggccatcaaaattattatttttacttagtagttagtat 238  Q
    |||| |||| || ||||||||||||||||||||| ||||||||||    
T  47059677 ttttaaggggcaccaaaattattatttttacttattagttagtat 47059721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 47082125 - 47082081
Alignment:
Q  194 tttttagggccatcaaaattattatttttacttagtagttagtat 238  Q
    |||| |||| || ||||||||||||||||||||| ||||||||||    
T  47082125 ttttaaggggcaccaaaattattatttttacttattagttagtat 47082081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 10669057 - 10668970
Alignment:
Q  157 agggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagtataatata 244  Q
    |||| |||| ||||||||||||| |||||||||||| ||||||||| || ||||||||||||||||||||| |||||||||| |||||    
T  10669057 agggtgggcgggaggggcagcagtccagggcaccatttttttaggggcaccaaaattattatttttacttattagttagtattatata 10668970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 12174257 - 12174350
Alignment:
Q  144 aggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    |||||||||||| ||||| ||| |||||||||| | || |||||||||| |||| || | || |||||||||||||||||||||||||||||||    
T  12174257 aggggtggccctgagggcaggcaggaggggcagtaacctagggcaccattttttaagaggcaccaaaattattatttttacttagtagttagta 12174350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 13229257 - 13229332
Alignment:
Q  157 agggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagt 232  Q
    ||||||||| |||||||| |||||||| |||||||| ||||||| | || ||||||||||||||||||||||||||    
T  13229257 agggcgggcaggaggggcggcagcccaaggcaccatttttttagaggcaccaaaattattatttttacttagtagt 13229332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 234
Target Start/End: Complemental strand, 35122145 - 35122053
Alignment:
Q  142 gcaggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagtta 234  Q
    |||||||| ||||| |||||||||  ||||||| ||||| || |||||||| |  |||||| || ||||||||||||||||||||||||||||    
T  35122145 gcaggggtagccctgagggcgggcttgaggggcggcagcacaaggcaccatttaattaggggcaccaaaattattatttttacttagtagtta 35122053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 33344760 - 33344823
Alignment:
Q  171 gggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagtta 234  Q
    |||| |||||||| |||||||| |  |||||| || ||||||||||||||||||||||||||||    
T  33344760 gggcggcagcccaaggcaccatttaattaggggcaccaaaattattatttttacttagtagtta 33344823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 233
Target Start/End: Original strand, 34969383 - 34969422
Alignment:
Q  194 tttttagggccatcaaaattattatttttacttagtagtt 233  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  34969383 tttttaagggcatcaaaattattatttttacttagtagtt 34969422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 4338044 - 4337990
Alignment:
Q  183 agggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    ||||||||||  ||||| || || ||||||||||| |||||||||||||||||||    
T  4338044 agggcaccattattttatgggcaccaaaattattacttttacttagtagttagta 4337990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 245
Target Start/End: Complemental strand, 6274060 - 6274022
Alignment:
Q  207 caaaattattatttttacttagtagttagtataatatac 245  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  6274060 caaaattattattttaacttagtagttagtattatatac 6274022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 13481710 - 13481670
Alignment:
Q  194 tttttagggccatcaaaattattatttttacttagtagtta 234  Q
    ||||||||| ||||||||||||||||||| | |||||||||    
T  13481710 tttttaggggcatcaaaattattatttttccgtagtagtta 13481670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 1240366 - 1240457
Alignment:
Q  146 gggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    |||||||||| ||||||||  |||||||| |||||||||| |||||| ||||||||| ||  ||||||||||||||||||||||||||||||    
T  1240366 gggtggccctgagggcgggatggaggggcggcagcccaggacaccatttttttaggggcactaaaattattatttttacttagtagttagta 1240457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 23898089 - 23897994
Alignment:
Q  142 gcaggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    |||||||||||||| |||| ||||  ||||||| ||||||||||| ||||| ||||||||| || ||||||||| |||||||||||||||||||||    
T  23898089 gcaggggtggccctgagggtgggcttgaggggcggcagcccagggaaccatttttttaggggcaccaaaattatcatttttacttagtagttagta 23897994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 143 - 237
Target Start/End: Original strand, 23935124 - 23935218
Alignment:
Q  143 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    ||||||||||||| | || ||||  ||||||| ||||||||||||||||| ||||||||| || ||||||||  |||||||||||||||||||||    
T  23935124 caggggtggccctgaaggtgggcttgaggggcggcagcccagggcaccatttttttagggtcaccaaaattaacatttttacttagtagttagta 23935218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 35405285 - 35405346
Alignment:
Q  168 gaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagta 230  Q
    ||||||| ||||||||||||||||| ||||||||| || ||||||||||||||||||||||||    
T  35405285 gaggggcggcagcccagggcaccat-tttttaggggcaccaaaattattatttttacttagta 35405346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 10976308 - 10976216
Alignment:
Q  144 aggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagt 236  Q
    |||| ||||||| |||| |||| || ||||| |||| ||| |||||||| ||||||||| |||||||||||||| ||||| ||||| ||||||    
T  10976308 agggatggccctgagggtgggcgggcggggcggcagtccaaggcaccatttttttaggggcatcaaaattattagttttatttagtggttagt 10976216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 8246911 - 8246819
Alignment:
Q  143 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    |||||||||||||  ||| |||| | |||||| ||||  ||||||||||| ||||||||  || ||||||||||||||||||||| |||||||||    
T  8246911 caggggtggccctgcgggtgggcggaaggggcggcagttcagggcaccatttttttagg--caccaaaattattatttttacttaatagttagta 8246819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 22667769 - 22667683
Alignment:
Q  146 gggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagt 232  Q
    ||||||| || ||||||||   ||||||| |||||| |||||||||| | ||||||| ||  |||||||||||||||| ||||||||    
T  22667769 gggtggctctgagggcgggtttgaggggcggcagcctagggcaccatttatttaggggcacaaaaattattatttttatttagtagt 22667683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 45385427 - 45385334
Alignment:
Q  145 ggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagtat 238  Q
    ||||||||||| |||| |||| |||| ||  |||||| ||| |||||| || | ||||  ||||||||||||||||||| ||||||||| ||||    
T  45385427 ggggtggccctgagggtgggcgggagaggtggcagcctaggacaccattttataaggggtatcaaaattattatttttatttagtagtttgtat 45385334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 35204347 - 35204307
Alignment:
Q  204 catcaaaattattatttttacttagtagttagtataatata 244  Q
    ||||||||||||||||||||||||||| ||||||| |||||    
T  35204347 catcaaaattattatttttacttagtaattagtattatata 35204307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 49084554 - 49084598
Alignment:
Q  1 tggttctattgtggaagaactaaaattgtttctagttttgaatgt 45  Q
    |||||||| |||||| || ||||||||||||||||||||||||||    
T  49084554 tggttctactgtggaggagctaaaattgtttctagttttgaatgt 49084598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 234
Target Start/End: Complemental strand, 34299147 - 34299057
Alignment:
Q  144 aggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagtta 234  Q
    ||||||| |||| |||| ||||  ||||||| |||||||||| ||||||  ||||| || ||  |||||| |||||||| |||||||||||    
T  34299147 aggggtgaccctgagggtgggctcgaggggcggcagcccaggacaccattcttttaagggcactaaaattgttatttttccttagtagtta 34299057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 1153903 - 1153822
Alignment:
Q  157 agggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagtat 238  Q
    ||||||| | |||||||| | ||| |||| |||||| ||||  ||| || || |||||||||||||| ||||||||||||||    
T  1153903 agggcggacgggaggggcggtagctcaggacaccatcttttagggggcaccacaattattatttttatttagtagttagtat 1153822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 40933 - 40869
Alignment:
Q  170 ggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagtta 234  Q
    ||||| || ||||| | |||||| || |||||| || |||||||||||||||||||| |||||||    
T  40933 ggggcggccgcccaagacaccattttattaggggcaccaaaattattatttttactttgtagtta 40869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 3265655 - 3265563
Alignment:
Q  146 gggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagtat 238  Q
    |||||||||| ||||  ||| |||||  | ||||| ||||||||||| || | | ||  | ||||||||||||||||||||| ||||||||||    
T  3265655 gggtggccctgagggtaggcgggaggaactgcagcacagggcaccattttataaagggaaccaaaattattatttttacttaatagttagtat 3265563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 29664165 - 29664221
Alignment:
Q  181 ccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    ||||| |||||| |||||||||  |  ||||||||||||||||||||||| ||||||    
T  29664165 ccaggacaccatttttttagggatactaaaattattatttttacttagtaattagta 29664221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 15134644 - 15134550
Alignment:
Q  143 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    ||||||||||||| |||||||||   |||||| ||||||||||||| || |||||||||| || ||||||||||||||||||||||||| |||||    
T  15134644 caggggtggccctgagggcgggcttaaggggcggcagcccagggcatcaaatttttaggggcaccaaaattattatttttacttagtagctagta 15134550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 30095927 - 30095862
Alignment:
Q  169 aggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagtta 234  Q
    |||||| ||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||    
T  30095927 aggggcggcagcccagggcaccatttttttaggggcaccaaaattattatttttacttagtagtta 30095862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 21828097 - 21828180
Alignment:
Q  143 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttactt 226  Q
    ||||||||||||| |||| ||||  ||||||| ||||||||||||||||| | ||||||| ||| |||||||||||||||||||    
T  21828097 caggggtggccctgagggagggcgcgaggggctgcagcccagggcaccatttctttaggggcataaaaattattatttttactt 21828180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 35812589 - 35812644
Alignment:
Q  182 cagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||| || ||||||    
T  35812589 cagggcaccatttttttaggggcatcaaaattattatttttacttaataattagta 35812644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 21292884 - 21292822
Alignment:
Q  182 cagggcaccatatttttagggccatcaaaattattatttttacttagtagttagtataatata 244  Q
    ||||||||| | ||||||||| || |||||||||||||||||||||||||||| ||| |||||    
T  21292884 cagggcaccgtctttttaggggcaccaaaattattatttttacttagtagttaatatcatata 21292822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 26914490 - 26914434
Alignment:
Q  188 accatatttttagggccatcaaaattattatttttacttagtagttagtataatatac 245  Q
    ||||| |||||||||  |||||||||||||||||||||||||||||||||| ||||||    
T  26914490 accatttttttagggt-atcaaaattattatttttacttagtagttagtattatatac 26914434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 3940806 - 3940743
Alignment:
Q  181 ccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagtataatata 244  Q
    |||||||| ||| |||||| |  |||| |||||||||||||||||||||||| |||||||||||    
T  3940806 ccagggcatcatttttttaagcgcatccaaattattatttttacttagtagtaagtataatata 3940743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 36066100 - 36066136
Alignment:
Q  194 tttttagggccatcaaaattattatttttacttagta 230  Q
    ||||||||| |||||||||||||||||||||||||||    
T  36066100 tttttagggtcatcaaaattattatttttacttagta 36066136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 40351956 - 40351860
Alignment:
Q  148 gtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagtataatata 244  Q
    |||||||| |||| |||  |||||||| | ||||||||| || ||  ||||| || || |||| |||||||||||||| |||||||||||| |||||    
T  40351956 gtggccctgagggtgggagggaggggcggaagcccagggtacaattattttaagggcaccaaagttattatttttactcagtagttagtattatata 40351860  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 49164908 - 49164865
Alignment:
Q  194 tttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    |||||| || ||||| ||||||||||||||||||||||||||||    
T  49164908 tttttaagggcatcataattattatttttacttagtagttagta 49164865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 31329718 - 31329678
Alignment:
Q  205 atcaaaattattatttttacttagtagttagtataatatac 245  Q
    |||||||||||||||||||||| ||| ||||||| ||||||    
T  31329718 atcaaaattattatttttacttcgtaattagtattatatac 31329678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 37996496 - 37996536
Alignment:
Q  194 tttttagggccatcaaaattattatttttacttagtagtta 234  Q
    |||||| || || ||||||||||||||||||||||||||||    
T  37996496 tttttatgggcaccaaaattattatttttacttagtagtta 37996536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 16648025 - 16647942
Alignment:
Q  145 ggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttag 228  Q
    ||||||||| | |||||||||  ||||||| ||| ||||||||||||| ||||||||| |||||||||||||||||||| ||||    
T  16648025 ggggtggccgtgagggcgggcacgaggggcggcaacccagggcaccatttttttaggggcatcaaaattattatttttatttag 16647942  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 37911368 - 37911459
Alignment:
Q  143 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagtta 234  Q
    ||||||||||||| || |||| |  ||||||| |||||||||| |||||| | ||||||| || |||||||||||||||| |||||||||||    
T  37911368 caggggtggccctgagcgcggccttgaggggcggcagcccaggacaccatttatttaggggcaccaaaattattatttttgcttagtagtta 37911459  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 237
Target Start/End: Original strand, 5163728 - 5163822
Alignment:
Q  143 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    ||||||||| ||  |||| |||| |||||| |  ||||| ||||||| ||  |||||||| ||||||||||||||||||||||||||||||||||    
T  5163728 caggggtggtccagagggtgggcgggagggacgacagcctagggcactattattttaggggcatcaaaattattatttttacttagtagttagta 5163822  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 17271423 - 17271355
Alignment:
Q  176 gcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagtataatata 244  Q
    |||||||||||| | || |||||||||  | |||||||||||||||||||||||||| |||||||||||    
T  17271423 gcagcccagggcgctatttttttaggggtaccaaaattattatttttacttagtagtcagtataatata 17271355  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 34909508 - 34909438
Alignment:
Q  167 ggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    |||||| | ||||||||||| |||||  |||||||| ||| |||||||||||||||||||| |||||||||    
T  34909508 ggagggacggcagcccagggtaccattattttaggggcattaaaattattatttttacttactagttagta 34909438  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 40877067 - 40877017
Alignment:
Q  194 tttttagggccatcaaaattattatttttacttagtagttagtataatata 244  Q
    ||||||||| || |||||||||||||||||||| ||||||||||| |||||    
T  40877067 tttttagggacaccaaaattattatttttacttggtagttagtattatata 40877017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 4206720 - 4206661
Alignment:
Q  177 cagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    ||||||||  |||||| ||||||||| || |||||||||||| ||||||||||||||||||    
T  4206720 cagcccagaacaccat-tttttaggggcaccaaaattattatatttacttagtagttagta 4206661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 34345878 - 34345926
Alignment:
Q  187 caccatatttttagggccatcaaaattattatttttacttagtagttag 235  Q
    ||||||| ||| ||||  |||||||||||||||||||||||||||||||    
T  34345878 caccataatttgaggggaatcaaaattattatttttacttagtagttag 34345926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 28556734 - 28556704
Alignment:
Q  207 caaaattattatttttacttagtagttagta 237  Q
    |||||||||||||||||||||||||||||||    
T  28556734 caaaattattatttttacttagtagttagta 28556704  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 7887347 - 7887286
Alignment:
Q  176 gcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    |||||||||||||||||   ||||||| || |||||||||||||||||||||||||||||||    
T  7887347 gcagcccagggcaccattggtttaggggcaccaaaattattatttttacttagtagttagta 7887286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 20870571 - 20870664
Alignment:
Q  144 aggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    ||||||||||||||||||||||  ||  ||| |||||  |||||||||| |||||| |   ||||||||||||||||||| |||||||||||||    
T  20870571 aggggtggccctcagggcgggcttgataggcggcagcttagggcaccatttttttaagagtatcaaaattattatttttatttagtagttagta 20870664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 3193715 - 3193621
Alignment:
Q  143 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    ||||||||||||| |||||||||  ||||||| | ||||||||||||||| ||  || || || |||||||||||||||||  |||||| |||||    
T  3193715 caggggtggccctgagggcgggctcgaggggcgggagcccagggcaccattttcataagggcaccaaaattattatttttatgtagtaggtagta 3193621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 239
Target Start/End: Original strand, 18600128 - 18600224
Alignment:
Q  143 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagtata 239  Q
    ||||||| ||||| |||| |||| |||| ||| |  |||||||||||||  ||| ||||| ||||||||||||||||||||  ||||||||| ||||    
T  18600128 caggggtagccctgagggtgggcgggagaggcggtggcccagggcaccaattttataggggcatcaaaattattatttttatatagtagttattata 18600224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 39542379 - 39542440
Alignment:
Q  176 gcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    ||||||||  ||||||| |||  |||| ||||||||||||||||||||| ||||||||||||    
T  39542379 gcagcccatagcaccatttttacaggggcatcaaaattattatttttacgtagtagttagta 39542440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 12263799 - 12263747
Alignment:
Q  185 ggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    |||||||| ||||||||| || ||||||||||||||||||||| | |||||||    
T  12263799 ggcaccatttttttaggggcaccaaaattattatttttacttaatggttagta 12263747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 32257827 - 32257783
Alignment:
Q  194 tttttagggccatcaaaattattatttttacttagtagttagtat 238  Q
    ||||||||  ||||||||| |||||||||||||||||||||||||    
T  32257827 tttttaggagcatcaaaataattatttttacttagtagttagtat 32257783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 502802 - 502841
Alignment:
Q  204 catcaaaattattatttttacttagtagttagtataatata 244  Q
    ||||||||||||||||||||||||| ||||||||| |||||    
T  502802 catcaaaattattatttttacttag-agttagtattatata 502841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 23922520 - 23922444
Alignment:
Q  142 gcaggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattat 218  Q
    |||||||||||||| |||||||||  ||| || | || |||||  |||||| | ||||||| |||||||||||||||    
T  23922520 gcaggggtggccctgagggcgggcttgagaggtaacaacccagaacaccatttgtttaggggcatcaaaattattat 23922444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 15670854 - 15670955
Alignment:
Q  143 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagtataata 242  Q
    ||||||||||||| ||||||||| |||||||  |||| |||||||||||  | ||| |||  |  ||||||||||||||||||||||||||| || ||||    
T  15670854 caggggtggccctgagggcgggcgggaggggtggcagtccagggcaccaattattttgggaaagtaaaattattatttttacttagtagttattacaata 15670953  T
Q  243 ta 244  Q
    ||    
T  15670954 ta 15670955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 11383527 - 11383621
Alignment:
Q  142 gcaggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    |||||||||||||| ||||  |||  ||||||| | |  |||||||||||  |||||||||| | ||||||||||||||||| |||||||||||||    
T  11383527 gcaggggtggccctgagggaaggcttgaggggcggaattccagggcaccacttttttagggc-accaaaattattatttttatttagtagttagta 11383621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 33510252 - 33510197
Alignment:
Q  182 cagggcaccatatttttag-ggccatcaaaattattatttttacttagtagttagt 236  Q
    ||||||||||| ||||||  || |||||||||||||||||||||||||||||||||    
T  33510252 cagggcaccatttttttaatggacatcaaaattattatttttacttagtagttagt 33510197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 54417164 - 54417122
Alignment:
Q  194 tttttagggccatcaaaattattatttttacttagtagttagt 236  Q
    ||||| ||||||||||||||||||||||||||| |||||||||    
T  54417164 tttttcgggccatcaaaattattatttttacttggtagttagt 54417122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 245
Target Start/End: Complemental strand, 18258024 - 18257977
Alignment:
Q  198 tagggccatcaaaattattatttttacttagtagttagtataatatac 245  Q
    ||||| ||||||| |||||||||||||||| |||||||||| ||||||    
T  18258024 tagggacatcaaatttattatttttacttaatagttagtattatatac 18257977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 27541210 - 27541167
Alignment:
Q  194 tttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    ||||||||| |||||||||||||||||||| |||||| ||||||    
T  27541210 tttttaggggcatcaaaattattatttttatttagtaattagta 27541167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 52706854 - 52706765
Alignment:
Q  143 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagt 232  Q
    |||| |||||||| ||||||| | ||||||||   || | ||| |||||| |||||| ||  ||||||||||||||||||| ||||||||    
T  52706854 caggagtggccctgagggcggacgggaggggcgatagtctaggacaccatttttttaagggtatcaaaattattatttttatttagtagt 52706765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 17713273 - 17713305
Alignment:
Q  204 catcaaaattattatttttacttagtagttagt 236  Q
    ||||||||||||||||||||||||||| |||||    
T  17713273 catcaaaattattatttttacttagtaattagt 17713305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 19014502 - 19014534
Alignment:
Q  204 catcaaaattattatttttacttagtagttagt 236  Q
    ||||||||||||||||||||||||||| |||||    
T  19014502 catcaaaattattatttttacttagtaattagt 19014534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 64974 - 65072
Alignment:
Q  142 gcaggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagtataat 241  Q
    |||||||||||||| ||||||| | | |||| | | || ||| |||||||| ||||||||| || |||||||||||| ||||||||||| |||||| |||    
T  64974 gcaggggtggccctaagggcgg-cggaagggacggtagtccaaggcaccatttttttaggggca-caaaattattatatttacttagtaattagtacaat 65071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 5785 - 5875
Alignment:
Q  146 gggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 237  Q
    |||||||||| |||||||||  ||||||| | |||||| |||||||| ||  || || || ||||||||||||||||| | |||||||||||    
T  5785 gggtggccctgagggcgggctagaggggcgggagcccaaggcaccatcttcatatgggcaccaaaattattattttta-tgagtagttagta 5875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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