View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18470_high_1 (Length: 756)

Name: NF18470_high_1
Description: NF18470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18470_high_1
NF18470_high_1
[»] chr2 (4 HSPs)
chr2 (9-647)||(3945448-3946083)
chr2 (432-571)||(41335288-41335427)
chr2 (707-738)||(3946143-3946174)
chr2 (414-535)||(39741077-39741198)
[»] chr4 (5 HSPs)
chr4 (414-589)||(35202297-35202472)
chr4 (432-579)||(22483403-22483550)
chr4 (444-568)||(7435196-7435320)
chr4 (429-568)||(35721705-35721844)
chr4 (432-478)||(23663651-23663697)
[»] chr7 (1 HSPs)
chr7 (414-568)||(8132015-8132169)
[»] chr1 (2 HSPs)
chr1 (413-547)||(34645998-34646132)
chr1 (415-550)||(24878860-24878995)
[»] chr3 (1 HSPs)
chr3 (429-553)||(41086156-41086280)
[»] chr5 (1 HSPs)
chr5 (459-571)||(13481013-13481125)
[»] chr8 (3 HSPs)
chr8 (466-549)||(28437329-28437412)
chr8 (517-568)||(33740199-33740250)
chr8 (519-569)||(33823811-33823861)


Alignment Details
Target: chr2 (Bit Score: 617; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 9 - 647
Target Start/End: Original strand, 3945448 - 3946083
Alignment:
Q  9 agcagagagggcataactgatgcattacttggtacagaagaagaactaaagattgaaccatatcttgaagtaaatccatttgtataaccattatgatcat 108  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3945448 agcagagaaggcataactgatgcattacttggtacagaagaagaactaaagattgaaccatatcttgaagtaaatccatttgtataaccattatgatcat 3945547  T
Q  109 tggcttcactggacgtaaacccggatgaaaagcctaatccaatagtattcatctgaggctgaaaatcataacctgaacttgttgagagtctagagatatt 208  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3945548 tggcttcactggacgtaaacccagatgaaaagcctaatccaatagtattcatctgaggctgaaaatcataacctgaacttgttgagagtctagagatatt 3945647  T
Q  209 gaaccttgagaatggaagattcacatcacaagagttactacttgataaaccataaaacataggactaatattatgatttaaggttgaatttgaagaagtg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3945648 gaaccttgagaatggaagattcacatcacaagagttactacttgataaaccataaaacataggactaatattatgatttaaggttgaatttgaagaagtg 3945747  T
Q  309 gtgtttggtgtggaactaggagttgaagaaggagaagaagaaatagaagtatcaatggtggagggtattttgatgagagtagtattgttactacgtttgt 408  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3945748 gtgtttggtgtggaactaggagtt---gaaggagaagaagaaatagaagtatcaatggtggagggtattttgatgagagtagtattgttactacgtttgt 3945844  T
Q  409 ttgagttgtttcttctgtaaccaccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttg 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3945845 ttgagttgtttcttctgtaaccaccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttg 3945944  T
Q  509 tgacaaactgtagttgttgtagtaacaaaactttgtgtttgatgagtcacaacgtggacacttgagagcttgttgttgctgctgctgatgaagtttttga 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3945945 tgacaaactgtagttgttgtagtaacaaaactttgtgtttgatgagtcacaacgtggacacttgagagcttgttgttgctgctgctgatgaagtttttga 3946044  T
Q  609 ccttgtttttccattatcttaacatcatctatttgattc 647  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3946045 ccttgtttttccattatcttaacatcatctatttgattc 3946083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 432 - 571
Target Start/End: Complemental strand, 41335427 - 41335288
Alignment:
Q  432 ccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgacaaactgtagttgttgtagt 531  Q
    |||||||||||||||||||| |  | ||| |||||||||||||||||  | || |  || || || ||||||||||| |||||  | |||||||||||||    
T  41335427 ccaccaacaggaacatttcttaatgcaccccctcttgtccaataacgcctacatgtcttgcaaaagtgtcttggttgagacaagttatagttgttgtagt 41335328  T
Q  532 aacaaaactttgtgtttgatgagtcacaacgtggacactt 571  Q
    ||||||| ||||| || | ||| || ||||| ||||||||    
T  41335327 aacaaaattttgtattggttgattcgcaacgaggacactt 41335288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 707 - 738
Target Start/End: Original strand, 3946143 - 3946174
Alignment:
Q  707 tctagctagggtatgtaatgtaatgtatgaga 738  Q
    ||||||||||||||||||||||||||||||||    
T  3946143 tctagctagggtatgtaatgtaatgtatgaga 3946174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 535
Target Start/End: Complemental strand, 39741198 - 39741077
Alignment:
Q  414 ttgtttcttctgtaaccaccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgaca 513  Q
    |||||| ||||| | ||||| |||||||||||||| || |  || |||||| | |||||||| | | |||||| ||| ||||||| |||||| || |  |    
T  39741198 ttgttttttctgcatccacctccaacaggaacattccttaatgttccacctttggtccaataccttctgcaagatttgcagaaatatcttggctgagtaa 39741099  T
Q  514 aactgtagttgttgtagtaaca 535  Q
     ||||||||||||||| |||||    
T  39741098 gactgtagttgttgtaataaca 39741077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 7e-42; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 414 - 589
Target Start/End: Complemental strand, 35202472 - 35202297
Alignment:
Q  414 ttgtttcttctgtaaccaccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgaca 513  Q
    |||||| ||||| ||||||||||||||||||| |||||||| || ||||||||||||||||| | ||| || ||||| ||||| |||||||||||||| |    
T  35202472 ttgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgata 35202373  T
Q  514 aactgtagttgttgtagtaacaaaactttgtgtttgatgagtcacaacgtggacacttgagagcttgttgttgctg 589  Q
    |||| ||||| || |||||||| || || ||||||||||| ||||||||||||||| | | |||||||||||||||    
T  35202372 aactatagttattatagtaacagaatttagtgtttgatgaatcacaacgtggacaccttaaagcttgttgttgctg 35202297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 432 - 579
Target Start/End: Original strand, 22483403 - 22483550
Alignment:
Q  432 ccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgacaaactgtagttgttgtagt 531  Q
    ||||||||||||||||| || || ||||||||| | |||||||| |   | ||||  || ||||||| |||||||||||| | |||||| ||||||||||    
T  22483403 ccaccaacaggaacattccttagtgtaccacctttagtccaatatctcctacaagacttgcagaaatatcttggttgtgaaagactgtaattgttgtagt 22483502  T
Q  532 aacaaaactttgtgtttgatgagtcacaacgtggacacttgagagctt 579  Q
    ||||||| || |||||   ||||||||| | |||||| || |||||||    
T  22483503 aacaaaatttggtgttgtttgagtcacatcttggacattttagagctt 22483550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 444 - 568
Target Start/End: Complemental strand, 7435320 - 7435196
Alignment:
Q  444 acatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgacaaactgtagttgttgtagtaacaaaactttg 543  Q
    |||||||| ||||  |||||||||||||| || | | ||||||  || ||||| ||||| || || || | ||||||||||||| |||| ||||| ||||    
T  7435320 acatttcttagagcgccacctcttgtccagtaccttctgcaagtcttgcagaagtgtctgggctgagagagactgtagttgttgaagtagcaaaattttg 7435221  T
Q  544 tgtttgatgagtcacaacgtggaca 568  Q
    |||| | ||| ||||||||||||||    
T  7435220 tgttggttgattcacaacgtggaca 7435196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 429 - 568
Target Start/End: Complemental strand, 35721844 - 35721705
Alignment:
Q  429 ccaccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgacaaactgtagttgttgt 528  Q
    |||||||||||||||||||| |  ||||| |||||| | ||||| |  | ||| |||||| ||||||| || |  ||||| |||    |||| |||||||    
T  35721844 ccaccaccaacaggaacattgcgtagagttccacctttagtccagtgtcttttacaagctctacagaagtgacgaggttgagacttgttgtaattgttgt 35721745  T
Q  529 agtaacaaaactttgtgtttgatgagtcacaacgtggaca 568  Q
    ||||||||||||||||||||| ||| ||||| | ||||||    
T  35721744 agtaacaaaactttgtgtttgttgaatcacatcttggaca 35721705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 432 - 478
Target Start/End: Complemental strand, 23663697 - 23663651
Alignment:
Q  432 ccaccaacaggaacatttctaagagtaccacctcttgtccaataacg 478  Q
    |||||||| |||||||||||||| | ||| |||||||||||||||||    
T  23663697 ccaccaactggaacatttctaagtgcaccccctcttgtccaataacg 23663651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 414 - 568
Target Start/End: Original strand, 8132015 - 8132169
Alignment:
Q  414 ttgtttcttctgtaaccaccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgaca 513  Q
    ||||| |||||  ||||||| ||||||||||| |||| ||| | ||||||| | |||||||||||    |||| ||| || ||||| | ||||||||| |    
T  8132015 ttgttccttctacaaccacctccaacaggaacgtttcgaagtgcaccacctttagtccaataacgacgacaagttttgcaaaaatggcgtggttgtgaaa 8132114  T
Q  514 aactgtagttgttgtagtaacaaaactttgtgtttgatgagtcacaacgtggaca 568  Q
     | |||||||||||||||| || ||||||||||||| ||| ||||| | ||||||    
T  8132115 gattgtagttgttgtagtagcagaactttgtgtttgttgattcacatcttggaca 8132169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 413 - 547
Target Start/End: Complemental strand, 34646132 - 34645998
Alignment:
Q  413 gttgtttcttctgtaaccaccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgac 512  Q
    ||||||| ||||  ||||||||||||||||||  |||||||  |  ||||||   |||||||| | | | || | ||| ||||||| ||||||||||| |    
T  34646132 gttgttttttcttgaaccaccaccaacaggaatgtttctaatggatccaccttgagtccaataccttctacatgttttgcagaaatatcttggttgtgtc 34646033  T
Q  513 aaactgtagttgttgtagtaacaaaactttgtgtt 547  Q
    ||||| |||||||||||||||||||| ||||||||    
T  34646032 aaactatagttgttgtagtaacaaaattttgtgtt 34645998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 415 - 550
Target Start/End: Complemental strand, 24878995 - 24878860
Alignment:
Q  415 tgtttcttctgtaaccaccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgacaa 514  Q
    ||||| ||||| | ||||||||||||||||||||||| || |  |||||| |||||||||| | | ||||  |||| || |||| ||||||||| |  ||    
T  24878995 tgttttttctgcagccaccaccaacaggaacatttctgagggatccaccttttgtccaataccttctgcatcctttgcaaaaatatcttggttgagttaa 24878896  T
Q  515 actgtagttgttgtagtaacaaaactttgtgtttga 550  Q
     |||||||| |||||||| || || |||||||||||    
T  24878895 gctgtagttattgtagtagcagaattttgtgtttga 24878860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 429 - 553
Target Start/End: Original strand, 41086156 - 41086280
Alignment:
Q  429 ccaccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgacaaactgtagttgttgt 528  Q
    |||||||||||||||||||| | |||||  |||||| | |||||||||||| | ||| |||| || ||||  | ||| || ||||| ||||| |||||||    
T  41086156 ccaccaccaacaggaacattccgaagagagccacctttggtccaataacgtctacaacctttgcaaaaataccgtggctgggacaagctgtaattgttgt 41086255  T
Q  529 agtaacaaaactttgtgtttgatga 553  Q
    ||||||| || || |||||||||||    
T  41086256 agtaacagaatttggtgtttgatga 41086280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 459 - 571
Target Start/End: Complemental strand, 13481125 - 13481013
Alignment:
Q  459 ccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgacaaactgtagttgttgtagtaacaaaactttgtgtttgatgagtcac 558  Q
    |||||| |||||||||| | | | || | ||| |||||||||||||||||||  || || |||||||||||||| || || |||||||| | ||||||||    
T  13481125 ccaccttttgtccaatatcttctacatgttttgcagaaatgtcttggttgtgttaagctatagttgttgtagtagcagaattttgtgttgggtgagtcac 13481026  T
Q  559 aacgtggacactt 571  Q
    | | |||||||||    
T  13481025 atcttggacactt 13481013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 466 - 549
Target Start/End: Complemental strand, 28437412 - 28437329
Alignment:
Q  466 ttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgacaaactgtagttgttgtagtaacaaaactttgtgtttg 549  Q
    |||||||||| | | |||| | ||| ||||||||||||||||| |  | ||||||||||||||||||||| || ||||||||||    
T  28437412 ttgtccaatatcttctgcatgttttgcagaaatgtcttggttgagtgagactgtagttgttgtagtaacagaattttgtgtttg 28437329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 517 - 568
Target Start/End: Original strand, 33740199 - 33740250
Alignment:
Q  517 tgtagttgttgtagtaacaaaactttgtgtttgatgagtcacaacgtggaca 568  Q
    ||||||||||||||||||||||||| ||||| | ||| ||||||||||||||    
T  33740199 tgtagttgttgtagtaacaaaacttagtgttggttgaatcacaacgtggaca 33740250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 519 - 569
Target Start/End: Complemental strand, 33823861 - 33823811
Alignment:
Q  519 tagttgttgtagtaacaaaactttgtgtttgatgagtcacaacgtggacac 569  Q
    |||||||||||||||||||| ||||||||||||||||| || | |||||||    
T  33823861 tagttgttgtagtaacaaaattttgtgtttgatgagtcgcatcttggacac 33823811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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