View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18470_high_2 (Length: 561)

Name: NF18470_high_2
Description: NF18470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18470_high_2
NF18470_high_2
[»] chr1 (13 HSPs)
chr1 (223-543)||(10352402-10352722)
chr1 (15-199)||(10352740-10352924)
chr1 (225-534)||(10180111-10180419)
chr1 (223-540)||(10341463-10341782)
chr1 (43-199)||(10180436-10180592)
chr1 (44-197)||(10341799-10341951)
chr1 (364-543)||(10355951-10356126)
chr1 (356-543)||(10352002-10352185)
chr1 (385-539)||(10180006-10180155)
chr1 (358-543)||(10335192-10335375)
chr1 (457-543)||(10352102-10352186)
chr1 (144-191)||(10356397-10356444)
chr1 (424-472)||(10352371-10352419)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 223 - 543
Target Start/End: Complemental strand, 10352722 - 10352402
Alignment:
Q  223 agattgaaatgataatgcatataagagagtgttgaatgagcattcctgactcatgatatgaaattaaataacagtaagaggttatttataactatcaaac 322  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10352722 agattgaaatgataatgcatataagagagtgttgaatgtacattcctaactcatgatatgaaattaaataacagtaagaggttatttataactatcaaac 10352623  T
Q  323 cacacataactcatcaggaatatacatggcacattttgattgtatcattacatagatactacgtgttttctgccaaacattgtattttgattggtactga 422  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10352622 cacacacaactcatcaggaatacacatggcacattttgattgtatcattacatagttactacgtgttttctgccaaacattgtattttgattggtactga 10352523  T
Q  423 ctttttaatcatgacgcgttaatacacatggcaggttttgattgtatcatattacttagaaacttgcgcgtattctgcaaaacattgaagtttgattggt 522  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  10352522 ctttttaatcatgacgcgttaatacacatggcaggttttgattgtatcatattacttagaaacttgctcgtattctgcaaaacattaaagtttgattggt 10352423  T
Q  523 gagtttttaatcgtgacgtgt 543  Q
    |||||||||||||||||||||    
T  10352422 gagtttttaatcgtgacgtgt 10352402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 10352924 - 10352740
Alignment:
Q  15 cagagagtcactaaagaaaaggaacaaaaaattgattaatcaaacacaatcgaaaaataataagtatagatccataagaaacatgtttacttacaaagag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10352924 cagagagtcactaaagaaaaggaacaaaaaattgattaatcaaacacaatcgaaaaataataagtatagatccataagaaacatgtttacttacaaagag 10352825  T
Q  115 aggatgagagcacaaatatgagagatctagagagcaagatgaaagtaggagaatgaaagtgaatttgaataatgatcggtctttg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10352824 aggatgagagcacaaatatgagagatctagagagcaagatgaaagtaggagaatgaaagtgaatttgaacaatgatcggtctttg 10352740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 225 - 534
Target Start/End: Complemental strand, 10180419 - 10180111
Alignment:
Q  225 attgaaatgataatgcatataagagagtgttgaatgagcattcctgactcatgatatgaaattaaataacagtaagaggttatttataactatcaaacca 324  Q
    ||||||| |||  |||||| |||||||| |||||||  ||||| ||||| ||||||||||||||||||| | ||| |||||||||||||| ||  |||||    
T  10180419 attgaaacgatggtgcatagaagagagtattgaatgtacattcatgacttatgatatgaaattaaataaaaataaaaggttatttataaccattgaacca 10180320  T
Q  325 cacataa-ctcatcaggaatatacatggcacattttgattgtatcattacatagatactacgtgttttctgccaaacattgtattttgattggtactgac 423  Q
    ||||||| ||||||| || || |||||||| |||||||| |||| | ||||||||||||||||||||||  |||||||||||||||||||||||||| |     
T  10180319 cacataaactcatcacgagtacacatggcatattttgatagtataaatacatagatactacgtgttttccaccaaacattgtattttgattggtacttag 10180220  T
Q  424 tttttaatcatgacgcgttaatacacatggcaggttttgattgtatcatattacttagaaacttgcgcgtattctgcaaaacattgaagtttgattggtg 523  Q
    |||||||||||||||||||  ||||||||||||||||| |||||||||||  ||| ||||||||| | ||||||||| ||||||||||||||||||||||    
T  10180219 tttttaatcatgacgcgtttttacacatggcaggtttttattgtatcata--actgagaaacttgtgtgtattctgccaaacattgaagtttgattggtg 10180122  T
Q  524 agtttttaatc 534  Q
    |||||||||||    
T  10180121 agtttttaatc 10180111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 223 - 540
Target Start/End: Complemental strand, 10341782 - 10341463
Alignment:
Q  223 agattgaaatgataatgcatataagagagtgttgaatgagcattcctgactcatgatatgaaattaaataacagtaagaggttatttataactatcaa-- 320  Q
    |||||||||||||| || | | ||||||||||||||||  ||||| || |||||||||||||||||||||| ||||| ||||| |||||||||||  |      
T  10341782 agattgaaatgatagtgaaaagaagagagtgttgaatgtacattcgtgcctcatgatatgaaattaaataaaagtaaaaggttctttataactatatatc 10341683  T
Q  321 -accacacataa-ctcatcaggaatatacatggcacattttgattgtatcattacatagatactacgtgttttctgccaaacattgtattttgattggta 418  Q
     || |||||||| || ||||  | || ||||||||  |||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||    
T  10341682 gacaacacataaacttatcacaagtacacatggcatgttttgattgtatcattacttagatactacgtattttccgccaaacattgtattttgattggta 10341583  T
Q  419 ctgactttttaatcatgacgcgttaatacacatggcaggttttgattgtatcatattacttagaaacttgcgcgtattctgcaaaacattgaagtttgat 518  Q
    |||| |||||||||||||||||||  ||||||||||| ||||||||||||||  ||||||| |||||||||| ||||||||| ||||||| ||| | |||    
T  10341582 ctgagtttttaatcatgacgcgttcttacacatggcaagttttgattgtatc--attactttgaaacttgcgtgtattctgctaaacatttaagctggat 10341485  T
Q  519 tggtgagtttttaatcgtgacg 540  Q
    |||  ||||||||||| |||||    
T  10341484 tggcaagtttttaatcatgacg 10341463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 43 - 199
Target Start/End: Complemental strand, 10180592 - 10180436
Alignment:
Q  43 aaattgattaatcaaacacaatcgaaaaataataagtatagatccataagaaacatgtttacttacaaagagaggatgagagcacaaatatgagagatct 142  Q
    ||||||||||||||  ||||||  || |||||||| |||||||| |||||| ||| |||||| | ||||||||||||||||||||| | ||||||||  |    
T  10180592 aaattgattaatcactcacaataaaataataataattatagatcgataagatacaagtttaccttcaaagagaggatgagagcacagacatgagagagtt 10180493  T
Q  143 agagagcaagatgaaagtaggagaatgaaagtgaatttgaataatgatcggtctttg 199  Q
    |||||||||||| ||| ||||||||||| |||||||||||| ||||| |||||||||    
T  10180492 agagagcaagatcaaactaggagaatgatagtgaatttgaacaatgaccggtctttg 10180436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 44 - 197
Target Start/End: Complemental strand, 10341951 - 10341799
Alignment:
Q  44 aattgattaatcaaacacaatcgaaaaataataagtatagatccataagaaacatgtttacttacaaaga-gaggatgagagcacaaatatgagagatct 142  Q
    |||||||||||||  ||||||| ||||||||||| |||||||| |||||| ||| |||||| | ||| || ||| |||||||||||||||| ||||| ||    
T  10341951 aattgattaatca--cacaatcaaaaaataataattatagatcgataagatacaagtttaccttcaatgaagagaatgagagcacaaatataagagagct 10341854  T
Q  143 agagagcaagatgaaagtaggagaatgaaagtgaatttgaataatgatcggtctt 197  Q
    ||||||||| | | ||||||||||||||||||||||||||| |||||||| ||||    
T  10341853 agagagcaatacgcaagtaggagaatgaaagtgaatttgaacaatgatcgatctt 10341799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 364 - 543
Target Start/End: Complemental strand, 10356126 - 10355951
Alignment:
Q  364 gtatcattacatagatactacgtgttttctgccaaacattgtattttgattggtactgactttttaatcatgacgcgttaatacacatggcaggttttga 463  Q
    ||||| |||| |||||||||| | |||||||||||||||||||||| || |||||||   |||||||||||||| | |    ||||||| ||| ||||||    
T  10356126 gtatcgttacttagatactacatattttctgccaaacattgtatttcgactggtactacatttttaatcatgacactt----acacatgacagattttga 10356031  T
Q  464 ttgtatcatattacttagaaacttgcgcgtattctgcaaaacattgaagtttgattggtgagtttttaatcgtgacgtgt 543  Q
    ||||||   |||| ||| ||||||||  ||||| ||||||||||||||||||||||||||||||||||||  ||||||||    
T  10356030 ttgtatatcattagttaaaaacttgcatgtattatgcaaaacattgaagtttgattggtgagtttttaatgatgacgtgt 10355951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 356 - 543
Target Start/End: Complemental strand, 10352185 - 10352002
Alignment:
Q  356 ttttgattgtatcattacatagatact-acgtgttttctgccaaacattgtattttgattggtactgactttttaatcatgacgcgttaatacacatggc 454  Q
    |||||||||||||||||  |||| ||| | |||| |||| ||||| |||||||||||||||||   || ||||||||| ||| | |||  ||||||||      
T  10352185 ttttgattgtatcattaattagaaacttatgtgtattctaccaaatattgtattttgattggt---gagtttttaatcgtgatgtgttcctacacatgtg 10352089  T
Q  455 aggttttgattgtatcatattacttagaaacttgcgcgtattctgcaaaacattgaagtttgattggtgagtttttaatcgtgacgtgt 543  Q
    | |||||||||||||||   |||||||||||||||| |||||| || |||||||  | |||||||| |||| |||||| ||||| ||||    
T  10352088 atgttttgattgtatcac--tacttagaaacttgcgtgtattccgccaaacattatattttgattgatgagattttaaacgtgatgtgt 10352002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 539
Target Start/End: Complemental strand, 10180155 - 10180006
Alignment:
Q  385 gtgttttctgccaaacattgtattttgattggtactgactttttaatcatgacgcgttaatacacatggcaggttttgattgtatcatattacttagaaa 484  Q
    |||| ||||||||||||||| | ||||||||||   || ||||||||||||| |||||  |||| |||||| | | |||||| |||||  |||| | |||    
T  10180155 gtgtattctgccaaacattgaagtttgattggt---gagtttttaatcatgatgcgttcttacaaatggcatgctatgattgaatcat--tactaaaaaa 10180061  T
Q  485 cttgcgcgtattctgcaaaacattgaagtttgattggtgagtttttaatcgtgac 539  Q
    ||| || ||||||| | ||| |||| | |||||| | ||||||||||||||||||    
T  10180060 cttacgtgtattctactaaagattgtattttgatggatgagtttttaatcgtgac 10180006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 543
Target Start/End: Complemental strand, 10335375 - 10335192
Alignment:
Q  358 ttgattgtatcattacatagatact-acgtgttttctgccaaacattgtattttgattggtactgactttttaatcatgacgcgttaatacacatggcag 456  Q
    |||||||||||||||  |||| ||| || ||| || | |||||  ||||||||||||||||   || ||| ||||| ||||| |||  |||||||||||     
T  10335375 ttgattgtatcattaattagaaacttacatgtattataccaaaggttgtattttgattggt---gagtttctaatcgtgacgtgttcctacacatggcat 10335279  T
Q  457 gttttgattgtatcatattacttagaaacttgcgcgtattctgcaaaacattgaa--gtttgattggtgagtttttaatcgtgacgtgt 543  Q
    ||||||||||||||  |||||||| ||||||||| |||||  || |||||||  |   ||||||||||||| |||||| ||||| ||||    
T  10335278 gttttgattgtatc--attacttacaaacttgcgtgtatttcgccaaacattatattttttgattggtgagattttaaacgtgatgtgt 10335192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 457 - 543
Target Start/End: Complemental strand, 10352186 - 10352102
Alignment:
Q  457 gttttgattgtatcatattacttagaaacttgcgcgtattctgcaaaacattgaagtttgattggtgagtttttaatcgtgacgtgt 543  Q
    ||||||||||||||||  || ||||||||||  | ||||||| | ||| |||| | |||||||||||||||||||||||||| ||||    
T  10352186 gttttgattgtatcat--taattagaaacttatgtgtattctaccaaatattgtattttgattggtgagtttttaatcgtgatgtgt 10352102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 10356444 - 10356397
Alignment:
Q  144 gagagcaagatgaaagtaggagaatgaaagtgaatttgaataatgatc 191  Q
    ||||||||||||||| ||||||||||||| |||||||||| |||||||    
T  10356444 gagagcaagatgaaaataggagaatgaaaatgaatttgaacaatgatc 10356397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 472
Target Start/End: Complemental strand, 10352419 - 10352371
Alignment:
Q  424 tttttaatcatgacgcgttaatacacatggcaggttttgattgtatcat 472  Q
    ||||||||| ||||| ||| |||||||||||| ||| ||||||||||||    
T  10352419 tttttaatcgtgacgtgttcatacacatggcatgttatgattgtatcat 10352371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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