View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18470_high_3 (Length: 352)
Name: NF18470_high_3
Description: NF18470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18470_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 61 - 342
Target Start/End: Original strand, 13949623 - 13949907
Alignment:
| Q |
61 |
tggtgggtttgagtgtagtgttagaatctcaaaaaggtggtggtattagcaatagcaagaagaaggaaactccaaaagtgattaacaaaacaatgatgct |
160 |
Q |
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| T |
13949623 |
tggtgggtttaagtgtagtgttagaatctcaaaaaggtggtggtattagcaatagcaagaagaaggaaactccaaaagtgattaacaaaacaatgatgct |
13949722 |
T |
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| Q |
161 |
tagtagtatcaacaacaaacaatcttctatagtttctttcagttcttattttcatcatgaatctcattttcaggaacaacaaacaacgtttcttgagctt |
260 |
Q |
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| T |
13949723 |
tagtagtatcaacaacaaacaatcttctatagtttctttcagttcttattttcatcatgaatctcattttcaggaacaacaaacaacgtttcttgagctt |
13949822 |
T |
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| Q |
261 |
tgttttctttgtaggaaaaagttgttacctggaaaagacatctacatgtacaagtaagtcctt--ctatatt-ttataacctatg |
342 |
Q |
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| T |
13949823 |
tgttttctttgtaggaaaaagctgttacctggaaaagacatctacatgtacaagtaagtccttccctatattattataacctatg |
13949907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 61 - 342
Target Start/End: Original strand, 14090830 - 14091114
Alignment:
| Q |
61 |
tggtgggtttgagtgtagtgttagaatctcaaaaaggtggtggtattagcaatagcaagaagaaggaaactccaaaagtgattaacaaaacaatgatgct |
160 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14090830 |
tggtgggtttaagtgtagtgttagaatctcaaaaaggtggtggtattagcaatagcaagaagaaggaaactccaaaagtgattaacaaaacaatgatgct |
14090929 |
T |
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| Q |
161 |
tagtagtatcaacaacaaacaatcttctatagtttctttcagttcttattttcatcatgaatctcattttcaggaacaacaaacaacgtttcttgagctt |
260 |
Q |
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| T |
14090930 |
tagtagtatcaacaacaaacaatcttctatagtttctttcagttcttattttcatcatgaatctcattttcaggaacaacaaacaacgtttcttgagctt |
14091029 |
T |
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| Q |
261 |
tgttttctttgtaggaaaaagttgttacctggaaaagacatctacatgtacaagtaagtcctt--ctatatt-ttataacctatg |
342 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
14091030 |
tgttttctttgtaggaaaaagctgttacctggaaaagacatctacatgtacaagtaagtccttccctatattattataacctatg |
14091114 |
T |
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