View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18470_high_4 (Length: 343)
Name: NF18470_high_4
Description: NF18470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18470_high_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 9 - 343
Target Start/End: Complemental strand, 3733071 - 3732736
Alignment:
| Q |
9 |
aagcagcacagattaggaagattgtgacttctgaaattgagtgcaaatctctcaagattgagaggtctcaaaaagttaccggaaaagtgtgcataagata |
108 |
Q |
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| T |
3733071 |
aagccgcacagattaggaagattgtgacttctgaaattgagtgcaaatctctcaagattgagaggtctcaaaaagttaccggaaaagtgtgcataagata |
3732972 |
T |
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| Q |
109 |
tcatcggctcatagataaaacgaatatatggtacatgttaatattgtgacactactattttagccacgccaaaacattagttcaggtagattcaaaatag |
208 |
Q |
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| T |
3732971 |
tcatcggctcatagataaaacgaatatatggtacatgttaatattgtgacactactattttagccacgccaaaacattagttcaggtagattcaaaatag |
3732872 |
T |
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| Q |
209 |
ttttgaagaaatctttcatgaatacaagttgagtttacctagttcaaatctaactgttttatttcaacaacaaaataatatctaattac-aattcgtatt |
307 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3732871 |
ttttgaagaaatctttcatgaatacaagttgagcttacctagttcaaatctaactgttttatttcaacaacaaaataatatctaattacaaattcgtatt |
3732772 |
T |
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| Q |
308 |
ctaaataaaattagcaaaggacaatcatttcaacat |
343 |
Q |
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||||||||||||||||||||| |||||||||||||| |
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| T |
3732771 |
ctaaataaaattagcaaaggaaaatcatttcaacat |
3732736 |
T |
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