View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18470_high_5 (Length: 334)
Name: NF18470_high_5
Description: NF18470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18470_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 305
Target Start/End: Original strand, 33969415 - 33969705
Alignment:
| Q |
15 |
gagatgaagtgaagagaatgatggaagagattgatactgatggtgacggattcatttcttatgatgagttcactgaattcgcaaaagccaaccgtggtct |
114 |
Q |
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| T |
33969415 |
gagatgaagtgaagagaatgatggaagagattgatactgatggcgacggattcatttcttatgatgagttcactgaattcgcaaaagccaaccgtggtct |
33969514 |
T |
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| Q |
115 |
agtcaaagatgtcgccaagannnnnnnnnnnnnnnncgcacctttaacctacctttgttggttgatttcattagagttttcaaaaatatattatatgtgt |
214 |
Q |
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| T |
33969515 |
agtcaaagatgtcgccaagattttttaactttttttcgcacctttaacctacctttgttggttgatttcattagagttttcaaaaatatattatatgtgt |
33969614 |
T |
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| Q |
215 |
gcatgatttctatattacattatgacaatgaaaggttcattaatttcatgaagttatactactgttttggatttttagaaccattttaatg |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33969615 |
gcatgatttctatattacattatgacaatgaaaggttcattaatttcatgaagttatactactgttttggatttttagaaccattttaatg |
33969705 |
T |
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