View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18470_high_8 (Length: 249)
Name: NF18470_high_8
Description: NF18470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18470_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 387690 - 387936
Alignment:
| Q |
1 |
ttatagatttcctacttagccttgtgaagaataa-gtgtaagaagaaggatggtacttaaactaagggaagtgtatagattgatccattcagcattctat |
99 |
Q |
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| T |
387690 |
ttatagatttcctacttagccttgtgaagaataaagtgtaagaagaaggatggtacttaaactaagggaagtgtatagattgatccatccagcattctat |
387789 |
T |
|
| Q |
100 |
ccttggcttagcagtggttactttcttgataatcaggaaaatgttaattccaac----nnnnnnnnnnnntggtaatgtcactgaagcatcttgaaaatg |
195 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
387790 |
ccttggcttagcagtggttactttcttgataatcagtaacatgttaattccaacaaaaaaaaataaaaaatggtaatgtaactgaagcatcttgaaaatg |
387889 |
T |
|
| Q |
196 |
tgtaaaatgggttctccctttctcgcccactgatcaaaatgcctttg |
242 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
387890 |
tgttaaatgggttctccctttctcgcccactgatcaaaatgcctttg |
387936 |
T |
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