View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18470_high_9 (Length: 237)
Name: NF18470_high_9
Description: NF18470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18470_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3732510 - 3732289
Alignment:
| Q |
1 |
tttccatcacttgttgtaacaagaaatgacaagctttgtcctaacaatttcactctagtgtcccaattttgtccccaattgtgtgacatcgaaatccaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3732510 |
tttccatcacttgttgtaacaagaaatgacaagctttgtcctaacaatttcactctagtgtcccaattttgtccccaattgtgtgacatcgaaatccaac |
3732411 |
T |
|
| Q |
101 |
cggtcgtcttcgaccctctaacactaacatgagaaacatcaccagcattggcaacattatacaccaagacaatnnnnnnntaaggatttccattgagttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3732410 |
cggtcgtcttcgaccctctaacactaacatgagaaacatcaccagcattggcaacattatacaccaagacaatcaaaaaataaggatttccattgagttc |
3732311 |
T |
|
| Q |
201 |
aaacctaacacccccacttttt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
3732310 |
aaacctaacacccccacttttt |
3732289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 167
Target Start/End: Complemental strand, 3745513 - 3745412
Alignment:
| Q |
63 |
ccaattttgtccccaattgtgtgacatcgaaatccaaccggtcgtcttcgaccctctaacactaacatgagaaacatcaccagcattggcaacattatac |
162 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||| | ||||| |||||| ||| ||| ||| |||||||||||||||||||||||||||| | | |
|
|
| T |
3745513 |
ccaattttgtccccaattacgtgacatagaaatccaac---ttgtcttggaccctttaatactcacacgagaaacatcaccagcattggcaacattgtgc |
3745417 |
T |
|
| Q |
163 |
accaa |
167 |
Q |
| |
|
||||| |
|
|
| T |
3745416 |
accaa |
3745412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 221
Target Start/End: Complemental strand, 3739823 - 3739641
Alignment:
| Q |
36 |
ttgtcctaacaatttcactctagtgtcccaattttgtccccaattgtgtgacatcgaaatccaaccggtcgtcttcgaccctctaacactaacatgagaa |
135 |
Q |
| |
|
|||||||| ||| |||| || ||| | ||||||||| ||||||||||||||||| | |||||| ||||| || |||||| | | ||||||| |||| |
|
|
| T |
3739823 |
ttgtcctaccaaattcattccagtattccaattttgcccccaattgtgtgacatgggaatccatccggta---ttagaccctttgatactaacactagaa |
3739727 |
T |
|
| Q |
136 |
acatcaccagcattggcaacattatacaccaagacaatnnnnnnntaaggatttccattgagttcaaacctaacacccccactttt |
221 |
Q |
| |
|
||||| || |||||||||||||| ||||||| |||| | ||| ||||| |||| |||||||||||||||||||||||| |
|
|
| T |
3739726 |
acatctcccgcattggcaacattgaacaccaaaacaagcaaaaagttagggtttcctttgatttcaaacctaacacccccactttt |
3739641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University