View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18471_high_1 (Length: 804)
Name: NF18471_high_1
Description: NF18471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18471_high_1 |
 | |
|
| [»] scaffold0087 (10 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
| [»] scaffold0209 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 19)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 414 - 785
Target Start/End: Original strand, 5163565 - 5163918
Alignment:
| Q |
414 |
tattagttggtttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgacttgtcaagaaa |
513 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5163565 |
tattagttggtttaaaccttttagggaatattctcacaggattcattcccaacaacattggtcatatgaaaatgttggaatcactcgacttgtcaagaaa |
5163664 |
T |
|
| Q |
514 |
ccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaattccactaagc |
613 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5163665 |
ccatctttcaggtaaaatgccaacaaacttttcaaatttgacatttctt------------------ttcaacaacttagaaggcaaaattccactaagc |
5163746 |
T |
|
| Q |
614 |
actcaactacaatcttttgatccctctgcatatgtcgggaacagttatgagtgactttgtggacaaccactcataaatcttcgccctggagatagccatg |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
5163747 |
actcaactacaatcttttgatccctctgcatatgtcgggaacagttatgaatgactttgtggacagccactcataaatctttgccctggagatagccatg |
5163846 |
T |
|
| Q |
714 |
acacacatgttaccagtgtagatgaagaatgaagataagctcataaccattgggttttatgttagcttaggg |
785 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5163847 |
acacacatgttaccagtgtagatgaagaatgaagataagctcataaccattgggttttatgttagcttaggg |
5163918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 404 - 654
Target Start/End: Complemental strand, 5889358 - 5889108
Alignment:
| Q |
404 |
aaacttgtggtattagttggtttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgact |
503 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||| ||| ||||||| |||| |||||||| |||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
5889358 |
aaacttgtggtattagttgatttgaacctttcaggaaatcatctcacaggattaattcccaaaaacattggtcatatggaaatgttggaatcactcgact |
5889259 |
T |
|
| Q |
504 |
tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat |
603 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5889258 |
tgtcaagaaaccatctttcgggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaataacttagaaggcaaaat |
5889159 |
T |
|
| Q |
604 |
tccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaa |
654 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||| || ||||| |
|
|
| T |
5889158 |
tccactaagcactcaactacaatcttttgatccttctacatacgtggggaa |
5889108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 404 - 702
Target Start/End: Original strand, 5883851 - 5884143
Alignment:
| Q |
404 |
aaacttgtggtattagttggtttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgact |
503 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||| ||||||| || | ||||||||||||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
5883851 |
aaacttgttgcattagttggtttaaacctttcagggaataatctcacaggaatgattcccaacaacattggtcatatgaaaatgttagaatcacttgact |
5883950 |
T |
|
| Q |
504 |
tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat |
603 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
5883951 |
tgtcaagaaaccatctttcgggtagaatgccaacaagcttttcaaatttgacatttcttggttacatgaacctgtcgttcaacaacttagaaggcaaaat |
5884050 |
T |
|
| Q |
604 |
tccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaacagttatgagtgactttgtggacaaccactcataaatcttcgccctgg |
702 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||| ||||||| |||| || | |||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
5884051 |
tccactaagcactcaactacaaacttttgattcctcttcatatgtgggga------ataatcgactttgtggacaaccgctcataaatctttgccctgg |
5884143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 5165491 - 5165273
Alignment:
| Q |
12 |
tgagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaat |
111 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5165491 |
tgagatgaatgataaagcggtcagtgctatcattctttgtcttggggataaggtttcgagtgaggtagcaagggagactactgttgtgtctatgtggaat |
5165392 |
T |
|
| Q |
112 |
aaacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatgg |
210 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| |||||||||||||||| |||||||||||| |||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
5165391 |
aaacttgattcattgtacatgaccaagtccttggcacatagacaatgtccgaaacaacaactctacttttaccgaatggtggaatcaaaacctataatgg |
5165292 |
T |
|
| Q |
211 |
agcaactgacagaattcaa |
229 |
Q |
| |
|
| ||| |||| ||||||| |
|
|
| T |
5165291 |
atcaattgacgaaattcaa |
5165273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 423 - 694
Target Start/End: Original strand, 5853709 - 5853974
Alignment:
| Q |
423 |
gtttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgacttgtcaagaaaccatctttc |
522 |
Q |
| |
|
|||||||||||||| |||||| ||||||| |||| |||||||| |||||| |||||||||||||||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
5853709 |
gtttaaacctttcaaggaataatctcacaggattaattcccaataacattggtcatatgaaaatgttagaatcgctcgatttgtcaagaaaccatctttc |
5853808 |
T |
|
| Q |
523 |
aggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaattccactaagcactcaacta |
622 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
5853809 |
tggtagaatgccaacaagcttttcaaatttaacatctcttagttacatgaacttgtctttcaacaacttagaaggcaaaattccaataagcactcagcta |
5853908 |
T |
|
| Q |
623 |
caatcttttgatccctctgcatatgtcgggaacagttatgagtgactttgtggacaaccactcataaatctt |
694 |
Q |
| |
|
||| |||||||| ||| | ||||||| |||| || | |||||||||||| |||||||||||||||| |
|
|
| T |
5853909 |
caaacttttgattcctattcatatgtgggga------ataatcgactttgtggaccaccactcataaatctt |
5853974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 404 - 694
Target Start/End: Original strand, 5881135 - 5881419
Alignment:
| Q |
404 |
aaacttgtggtattagttggtttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgact |
503 |
Q |
| |
|
||||| |||| ||||||||||||| |||||||||| ||| ||||||| |||| |||||||| |||||| |||||||||||||||| |||||| | |||| |
|
|
| T |
5881135 |
aaactcgtggcattagttggtttagacctttcaggaaatcatctcacaggattaattcccaaaaacattggtcatatgaaaatgttagaatcattggact |
5881234 |
T |
|
| Q |
504 |
tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat |
603 |
Q |
| |
|
|||||||||| ||||| | ||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||| |||||||| |||||||| ||||| |
|
|
| T |
5881235 |
tgtcaagaaatcatctctacggtaaaatgccaacaagcttttcaagtttgacatttcttggttacatgaacctgtcgttcaacaatttagaagggaaaat |
5881334 |
T |
|
| Q |
604 |
tccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaacagttatgagtgactttgtggacaaccactcataaatctt |
694 |
Q |
| |
|
||||||| | |||||||||||| ||||| |||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
5881335 |
tccactaggtactcaactacaaacttttcatccctctgcatatgtggggaacagt------ggactttgtggacagccactcataaatctt |
5881419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 410 - 658
Target Start/End: Original strand, 5821423 - 5821671
Alignment:
| Q |
410 |
gtggtattagttggtttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgacttgtcaa |
509 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||| |||||||||| | ||||||| |||||||| ||| || |||||| | |||||||||| |
|
|
| T |
5821423 |
gtggtattagttggtttaaacctttcaaggaataatctcacaggattcattcctagcaacattggtcatatggaaagtttagaatcattggacttgtcaa |
5821522 |
T |
|
| Q |
510 |
gaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaattccact |
609 |
Q |
| |
|
|||| ||||| | ||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||| |||||||| |||||||| ||||||||||| |
|
|
| T |
5821523 |
gaaatcatctctacggtaaaatgccaacaagcttttcaagtttgacatttcttggttacatgaacctgtcattcaacaatttagaagggaaaattccact |
5821622 |
T |
|
| Q |
610 |
aagcactcaactacaatcttttgatccctctgcatatgtcgggaacagt |
658 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| ||||||| ||||||||| |
|
|
| T |
5821623 |
aagcactcaactacaaacttttgatccatcttcatatgtggggaacagt |
5821671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 424 - 694
Target Start/End: Original strand, 5830769 - 5831033
Alignment:
| Q |
424 |
tttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgacttgtcaagaaaccatctttca |
523 |
Q |
| |
|
||||||||||||| |||||| ||||||| || ||||||| | ||||||| |||||||| ||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5830769 |
tttaaacctttcaaggaataatctcacaggaatcattcctagcaacattggtcatatggaaaggttagaatcactcgacttgtcaagaaaccatctttct |
5830868 |
T |
|
| Q |
524 |
ggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaattccactaagcactcaactac |
623 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
5830869 |
ggtagaatgccaacgagcttttcaaatttgacatttcttaataacatgaacttgtctttcaataacttagacggcaaaattccagtaagcactcaactac |
5830968 |
T |
|
| Q |
624 |
aatcttttgatccctctgcatatgtcgggaacagttatgagtgactttgtggacaaccactcataaatctt |
694 |
Q |
| |
|
|| |||||||| ||| | ||||||| |||| || | |||||||||||| |||||||||||||||| |
|
|
| T |
5830969 |
aaacttttgattcctattcatatgtgggga------ataatcgactttgtggaccaccactcataaatctt |
5831033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 404 - 654
Target Start/End: Original strand, 5761857 - 5762106
Alignment:
| Q |
404 |
aaacttgtggtattagttggtttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgact |
503 |
Q |
| |
|
||||| |||| ||||| || ||||||||||||| |||||| ||||||| |||| ||||| | ||||||| |||||||||||| || |||||||||||| |
|
|
| T |
5761857 |
aaactcgtggcattagctgctttaaacctttcatggaataatctcacaggatttattcctagcaacattggtcatatgaaaagtttacaatcactcgact |
5761956 |
T |
|
| Q |
504 |
tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat |
603 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| || |
|
|
| T |
5761957 |
tgtcaataaaccatctttcaggtagaatgccaacaagcttttcaaatttgacatttcttagtcacatgaacttgt-tttcaacaacttagaaggcaatat |
5762055 |
T |
|
| Q |
604 |
tccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaa |
654 |
Q |
| |
|
||| ||||||||||||||||| |||||| ||||| ||||||| ||||| |
|
|
| T |
5762056 |
tcccataagcactcaactacaaacttttggcccctcatcatatgttgggaa |
5762106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 25942203 - 25942420
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||| ||| || ||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
25942203 |
gagatgaatgataaagcggtcagcgctatcattctgtgtcttggggataaggtgttgagagaagtatcaagggagactactgctgtgtctatgtggaata |
25942302 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
||||||||| ||| ||||||||||||| || ||||||||||||||||||||||||||||| |||| |||||||| |||||| ||||||| ||||||||| |
|
|
| T |
25942303 |
aacttgattcattatacatgaccaagtctttggcacatagacaatgtctgaaacaacaactctacttttaccgaatggtggagtcaaaacctataatgga |
25942402 |
T |
|
| Q |
212 |
gcaactgacagaattcaa |
229 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
25942403 |
gcaactgacggagttcaa |
25942420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 17694498 - 17694281
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||| ||| || ||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
17694498 |
gagatgaatgataaagcggtcagcgctatcattctgtgtcttggggataaggtgttgagagaagtatcaagggagactactgctgtgtctatgtggaata |
17694399 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
||||||||| ||| ||||| ||||||| || ||||||||| ||||||||||||||||||| |||| ||| |||| |||||| ||||||| ||||||||| |
|
|
| T |
17694398 |
aacttgattaattatacataaccaagtctttggcacatagaaaatgtctgaaacaacaactctacttttatcgaatggtggagtcaaaacctataatgga |
17694299 |
T |
|
| Q |
212 |
gcaactgacagaattcaa |
229 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
17694298 |
gcaactgacggagttcaa |
17694281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 13879273 - 13879490
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||||||| ||||||| ||||||||||| ||| || ||| |||||||| |||||| ||||||||||||||||| |
|
|
| T |
13879273 |
gagatgaatgataaggcggtcagcgctatcattctgtgtcttggggataaggtgttgagagaagtatcaagggaggctactgctgtgtctatgtggaata |
13879372 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccg-aaggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
| ||||||| ||| ||||||||||||| || ||||||||||| ||||||||||||||||| |||| ||| || | |||||| ||||||| ||||||||| |
|
|
| T |
13879373 |
agcttgattcattatacatgaccaagtctttggcacatagacagtgtctgaaacaacaactctacttttatcgtatggtggagtcaaaacctataatgga |
13879472 |
T |
|
| Q |
212 |
gcaactgacagaattcaa |
229 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
13879473 |
gcaactgacggagttcaa |
13879490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 22351501 - 22351348
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||| ||||||||||| ||| || ||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
22351501 |
gagatgaatgataaagcgatcagtgctatcattctatgtcttggggataaggtgttgagagaagtatcaagggagactactgctgtgtctatgtggaata |
22351402 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaac |
166 |
Q |
| |
|
||||||||| ||| ||||||||||| | || |||||||| ||||||| ||||| |
|
|
| T |
22351401 |
aacttgattcattatacatgaccaaatctttggcacatagtcaatgtcggaaac |
22351348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 466 - 584
Target Start/End: Complemental strand, 2715531 - 2715409
Alignment:
| Q |
466 |
caacatttgtcatatgaaaatgttggaatcactcgacttgt----caagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttct |
561 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||| | ||||||| |||||| ||| |||||||||||||||| | ||||||||||| | |
|
|
| T |
2715531 |
caacatttgtcatatgaaaatgttagaatcgctcgacttatatatcaagaaattatctttattgtagaatgccaacaagctttgctaatttgacattcat |
2715432 |
T |
|
| Q |
562 |
tagttacatgaacttgtctttca |
584 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2715431 |
aagttacatgaacttgtctttca |
2715409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 742 - 781
Target Start/End: Original strand, 5881478 - 5881517
Alignment:
| Q |
742 |
atgaagataagctcataaccattgggttttatgttagctt |
781 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5881478 |
atgaagataagctcataaccattgggttttatgttagctt |
5881517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 733 - 785
Target Start/End: Original strand, 5884186 - 5884237
Alignment:
| Q |
733 |
agatgaagaatgaagataagctcataaccattgggttttatgttagcttaggg |
785 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
5884186 |
agatgaaga-tgaagataagctcataacctttgggttttatgttaccttaggg |
5884237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 742 - 781
Target Start/End: Original strand, 5762193 - 5762232
Alignment:
| Q |
742 |
atgaagataagctcataaccattgggttttatgttagctt |
781 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5762193 |
atgaagataagctcataacctttgggttttatgttagctt |
5762232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 742 - 781
Target Start/End: Original strand, 5831095 - 5831134
Alignment:
| Q |
742 |
atgaagataagctcataaccattgggttttatgttagctt |
781 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5831095 |
atgaagataagctcataacctttgggttttatgttagctt |
5831134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 742 - 781
Target Start/End: Original strand, 5854036 - 5854075
Alignment:
| Q |
742 |
atgaagataagctcataaccattgggttttatgttagctt |
781 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5854036 |
atgaagataagctcataacctttgggttttatgttagctt |
5854075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087 (Bit Score: 176; Significance: 2e-94; HSPs: 10)
Name: scaffold0087
Description:
Target: scaffold0087; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 404 - 694
Target Start/End: Original strand, 40862 - 41146
Alignment:
| Q |
404 |
aaacttgtggtattagttggtttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgact |
503 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||| |||||| ||||||| |||| ||||||||||||||| |||||||| ||| || |||||||| |||| |
|
|
| T |
40862 |
aaacttgtggcattagctggtttaaacctttcaaggaataatctcacaggattaattcccaacaacattggtcatatggaaacattagaatcacttgact |
40961 |
T |
|
| Q |
504 |
tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat |
603 |
Q |
| |
|
||||||||||||||||||| || | ||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
40962 |
tgtcaagaaaccatctttctgggagaatgccaccaagcttttcgtatttgacatttcttagttacatgaacttgtcgttcaacaacttagaaggtaaaat |
41061 |
T |
|
| Q |
604 |
tccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaacagttatgagtgactttgtggacaaccactcataaatctt |
694 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
41062 |
tccactaagcactcaactacaatcttttgatccctctacatatgtcgggaacagt------ggactttgtggacagccactcataaatctt |
41146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 404 - 646
Target Start/End: Original strand, 30829 - 31071
Alignment:
| Q |
404 |
aaacttgtggtattagttggtttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgact |
503 |
Q |
| |
|
||||| |||| ||||| |||||||||||||||| |||||| ||||||| |||||||||| | ||||||| |||||||| ||| || |||||||| |||| |
|
|
| T |
30829 |
aaactcgtggcattagctggtttaaacctttcatggaataatctcacaggattcattcctagcaacattggtcatatggaaagattagaatcactagact |
30928 |
T |
|
| Q |
504 |
tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat |
603 |
Q |
| |
|
| |||||||| ||| ||||||||| ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
30929 |
tatcaagaaaacatatttcaggtagaatgccaacgagcttaacaaatttgacatttcttagttacatggacttgtctttcaacaacttagaaggaaaaat |
31028 |
T |
|
| Q |
604 |
tccactaagcactcaactacaatcttttgatccctctgcatat |
646 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
31029 |
tccactaagcactcaactacaatcttttgatccatctacatat |
31071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #3
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 404 - 647
Target Start/End: Original strand, 20481 - 20724
Alignment:
| Q |
404 |
aaacttgtggtattagttggtttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgact |
503 |
Q |
| |
|
||||| |||| ||||| |||||||||||||||| |||||| ||||||| |||||||||| | ||||||| |||||||| ||| ||| |||||||| |||| |
|
|
| T |
20481 |
aaactcgtggcattagctggtttaaacctttcatggaataatctcacaggattcattcctagcaacattggtcatatggaaaggttagaatcacttgact |
20580 |
T |
|
| Q |
504 |
tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat |
603 |
Q |
| |
|
| |||||||| ||| |||| |||| |||||| || ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
20581 |
tctcaagaaatcatatttctggtagaatgccgacgagcttctcaaatttgacatttcttagttacatggacttgtctttcaacaacttagaaggaaaaat |
20680 |
T |
|
| Q |
604 |
tccactaagcactcaactacaatcttttgatccctctgcatatg |
647 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||| ||| |||||| |
|
|
| T |
20681 |
tccactatgcactcaactacaatcttttggtccatctacatatg |
20724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #4
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 404 - 654
Target Start/End: Original strand, 13423 - 13672
Alignment:
| Q |
404 |
aaacttgtggtattagttggtttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgact |
503 |
Q |
| |
|
||||| |||| ||||| || ||| ||||||||| |||||| ||||| | |||| ||||| | ||||||| |||||||| ||| || |||||||||||| |
|
|
| T |
13423 |
aaactcgtggcattagctgctttcaacctttcatggaataatctcaaaggatttattcctagcaacattggtcatatggaaagtttacaatcactcgact |
13522 |
T |
|
| Q |
504 |
tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat |
603 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| || |
|
|
| T |
13523 |
tgtcaagaaaccatctttcaggtagaatgccaacaagcttttcaaatttgacatttcttagtcacatgaacttgt-tttcaacaacttagaaggcaatat |
13621 |
T |
|
| Q |
604 |
tccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaa |
654 |
Q |
| |
|
||| ||||||||||||||||| |||||| ||||| ||||||| ||||| |
|
|
| T |
13622 |
tcccataagcactcaactacaaacttttggcccctcatcatatgttgggaa |
13672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 424 - 654
Target Start/End: Original strand, 34841 - 35070
Alignment:
| Q |
424 |
tttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgacttgtcaagaaaccatctttca |
523 |
Q |
| |
|
||||||||||||| |||||| ||||||| || ||||||| | ||| ||| |||||||| ||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34841 |
tttaaacctttcaaggaataatctcacaggaatcattcctagcaaaattggtcatatggaaaggttagaatcactcgacttgtcaagaaaccatctttct |
34940 |
T |
|
| Q |
524 |
ggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaattccactaagcactcaactac |
623 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| ||||| | ||||||||||||||||||| |||||||| | |||||||||| ||||||||||||||| |
|
|
| T |
34941 |
ggtagaatgccaacgagcttttcaaatttgacatctcttaataacatgaacttgtctttcaataacttagacgacaaaattccagtaagcactcaactac |
35040 |
T |
|
| Q |
624 |
aatcttttgatccctctgcatatgtcgggaa |
654 |
Q |
| |
|
|| ||||||| ||| | ||||||| ||||| |
|
|
| T |
35041 |
aa-attttgattcctattcatatgtggggaa |
35070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 742 - 781
Target Start/End: Original strand, 41205 - 41244
Alignment:
| Q |
742 |
atgaagataagctcataaccattgggttttatgttagctt |
781 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41205 |
atgaagataagctcataaccattgggttttatgttagctt |
41244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 742 - 781
Target Start/End: Original strand, 13759 - 13798
Alignment:
| Q |
742 |
atgaagataagctcataaccattgggttttatgttagctt |
781 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13759 |
atgaagataagctcataacctttgggttttatgttagctt |
13798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 742 - 781
Target Start/End: Original strand, 20824 - 20863
Alignment:
| Q |
742 |
atgaagataagctcataaccattgggttttatgttagctt |
781 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
20824 |
atgaagataagctaataacctttgggttttatgttagctt |
20863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 742 - 781
Target Start/End: Original strand, 31172 - 31211
Alignment:
| Q |
742 |
atgaagataagctcataaccattgggttttatgttagctt |
781 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
31172 |
atgaagataagctaataacctttgggttttatgttagctt |
31211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 742 - 781
Target Start/End: Original strand, 35164 - 35203
Alignment:
| Q |
742 |
atgaagataagctcataaccattgggttttatgttagctt |
781 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35164 |
atgaagataagctcataacatttgggttttatgttagctt |
35203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 7e-76; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 47882534 - 47882318
Alignment:
| Q |
14 |
agatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaataa |
113 |
Q |
| |
|
||||||||||||||||| |||||||||||||| | ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47882534 |
agatgaatgataaagcggtcagtgctatcattttgtgtcttggggataaggtgttgagagaggtagcaagggagactactgttgtgtctatgtgaaataa |
47882435 |
T |
|
| Q |
114 |
acttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatggag |
212 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||| |||||| ||||||| |||||||||| |
|
|
| T |
47882434 |
acttgattcattgtacatgaccaagtccttagcacatagacaatgtctgaaacaacaactctacttttaccgaatggtggagtcaaaacctataatggag |
47882335 |
T |
|
| Q |
213 |
caactgacagaattcaa |
229 |
Q |
| |
|
|||| ||| || ||||| |
|
|
| T |
47882334 |
caacagacggagttcaa |
47882318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 22625626 - 22625409
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||| || || ||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
22625626 |
gagatgaatgataaagcggtcagcgctatcattctgtgtcttggggataaggtgttgatagaagtatcaagggagactactgctgtgtctatgtggaata |
22625527 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
||||||||| ||| ||||||||||||| || ||||||||||| ||||||||||||||||| |||| |||||||| |||||| ||||||| ||||||||| |
|
|
| T |
22625526 |
aacttgattcattatacatgaccaagtctttggcacatagacagtgtctgaaacaacaactctacttttaccgaatggtggagtcaaaacctataatgga |
22625427 |
T |
|
| Q |
212 |
gcaactgacagaattcaa |
229 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
22625426 |
gcaactgacggagttcaa |
22625409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 10612424 - 10612207
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| ||| ||| ||||||||||| ||| | ||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
10612424 |
gagatgaatgataaagcggtcagcgctatcattctgtgttttggggataaggtgttgagaaaagtatcaagggagactattgttgtgtctatgtggaata |
10612325 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
||||||||| ||| ||||||||||||| || ||||||||||||||||||||||||||||| |||| ||| | || |||||| ||||||| ||||||||| |
|
|
| T |
10612324 |
aacttgattcattatacatgaccaagtctttggcacatagacaatgtctgaaacaacaactctacttttatcaaatggtggagtcaaaacctataatgga |
10612225 |
T |
|
| Q |
212 |
gcaactgacagaattcaa |
229 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
10612224 |
gcaactgacggagttcaa |
10612207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 10897539 - 10897756
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||| ||| || ||| |||||||| |||||| ||||||||||||||||| |
|
|
| T |
10897539 |
gagatgaatgataaagcggtcagcgctatcattctgtgtcttggggataaggtgttgagagaagtatcaagggaggctactgctgtgtctatgtggaata |
10897638 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
||||||||| ||| ||||||||||||| || || ||||| |||||||||||||||||||| |||| |||||||| |||||| ||||||| |||||| || |
|
|
| T |
10897639 |
aacttgattcattatacatgaccaagtctttggcccataggcaatgtctgaaacaacaactctacttttaccgaatggtggagtcaaaacctataatcga |
10897738 |
T |
|
| Q |
212 |
gcaactgacagaattcaa |
229 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
10897739 |
gcaactgacggagttcaa |
10897756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 29913602 - 29913385
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||| ||| | || ||||||||||| ||||||| ||||||||||| ||| || ||| |||||||| |||||| |||||||||| |||||| |
|
|
| T |
29913602 |
gagatgaatgataaggcggttagcgctatcattctgtgtcttggggataaggtgttgagagaagtatcaagggagtctactgctgtgtctatgaggaata |
29913503 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
||||||||| ||| ||||||||||||| || ||||||||||||||||||||||||||||| |||| |||||||| |||||| ||||||| ||||||||| |
|
|
| T |
29913502 |
aacttgattcattatacatgaccaagtctttggcacatagacaatgtctgaaacaacaactctacttttaccgaatggtggagtcaaaacctataatgga |
29913403 |
T |
|
| Q |
212 |
gcaactgacagaattcaa |
229 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
29913402 |
gcaactgacggagttcaa |
29913385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 54189048 - 54189261
Alignment:
| Q |
17 |
tgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaataaact |
116 |
Q |
| |
|
|||||||||| ||| |||| ||||||||| | ||||||| ||||||||||| ||| || ||| ||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
54189048 |
tgaatgataaggcggtcagcgctatcattatgtgtcttggggataaggtgttgagagaagtatcaagggaaactactgctgtgtctatgtggaataaact |
54189147 |
T |
|
| Q |
117 |
tgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatggagcaa |
215 |
Q |
| |
|
||||| ||| ||||||||||||| || ||||||||||||||||||||||||||||| |||| |||||||| |||||| ||||||| ||||||||||||| |
|
|
| T |
54189148 |
tgattcattatacatgaccaagtctttggcacatagacaatgtctgaaacaacaactctacttttaccgaatggtggagtcaaaacctataatggagcaa |
54189247 |
T |
|
| Q |
216 |
ctgacagaattcaa |
229 |
Q |
| |
|
||||| || ||||| |
|
|
| T |
54189248 |
ctgacggagttcaa |
54189261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 16458000 - 16458205
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||||||| ||||||| ||||||||||| ||| || ||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
16458000 |
gagatgaatgataaggcggtcagcgctatcattctgtgtcttggggataaggtgttgagagaagtatcaagggagactactgctgtgtctatgtggaata |
16458099 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
| ||||||| ||| ||||||||||||| || ||||||||||| ||||||||||||||||| |||| ||||| || |||||| ||||||| ||||||||| |
|
|
| T |
16458100 |
agcttgattcattatacatgaccaagtctttggcacatagacagtgtctgaaacaacaactctacttttaccaaatggtggagtcaaaacctataatgga |
16458199 |
T |
|
| Q |
212 |
gcaact |
217 |
Q |
| |
|
|||||| |
|
|
| T |
16458200 |
gcaact |
16458205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 6303845 - 6304062
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||| ||| ||| ||||||||||| ||||||| ||||||||||| ||| || ||| |||||||| |||||| ||||||||||||||||| |
|
|
| T |
6303845 |
gagatgaatgataaggcggtcaacgctatcattctgtgtcttggggataaggtgttgagagaagtatcaagggaggctactgctgtgtctatgtggaata |
6303944 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccg-aaggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
| ||||||| ||| ||||||||||||| || ||||||||||| ||||||||||||||||| |||| ||| || | |||||| ||||||| ||||||||| |
|
|
| T |
6303945 |
agcttgattcattatacatgaccaagtctttggcacatagacagtgtctgaaacaacaactctacttttatcgtatggtggagtcaaaacctataatgga |
6304044 |
T |
|
| Q |
212 |
gcaactgacagaattcaa |
229 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
6304045 |
gcaactgacggagttcaa |
6304062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 10205338 - 10205121
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||||||| ||||||| ||||||||||| ||| || ||| |||| | | |||||| ||||||||||||||||| |
|
|
| T |
10205338 |
gagatgaatgataaggcggtcagcgctatcattctgtgtcttggggataaggtgttgagagaagtatcaagaggggctactgctgtgtctatgtggaata |
10205239 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccg-aaggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
| ||||||| ||| ||||||||||||| || ||||||||||| ||||||||||||||||| |||| |||||| | |||||| ||||||| ||||||||| |
|
|
| T |
10205238 |
agcttgattcattatacatgaccaagtctttggcacatagacagtgtctgaaacaacaactctacttttaccgtatggtggagtcaaaacctataatgga |
10205139 |
T |
|
| Q |
212 |
gcaactgacagaattcaa |
229 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
10205138 |
gcaactgacggagttcaa |
10205121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 10098442 - 10098225
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||||| | ||||||| ||||||||||| ||| || ||| |||||| | |||||| ||||||||||||||||| |
|
|
| T |
10098442 |
gagatgaatgataaggcggtcagcgctatcattttgtgtcttggggataaggtgttgagagaagtatcaaggggggctactgctgtgtctatgtggaata |
10098343 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccg-aaggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
| ||||||| ||| ||||||||||||| || ||||||||||| ||||||||||||||||| |||| |||||| | |||||| ||||||| ||||||||| |
|
|
| T |
10098342 |
agcttgattcattatacatgaccaagtctttggcacatagacagtgtctgaaacaacaactctacttttaccgtatggtggagtcaaaacctataatgga |
10098243 |
T |
|
| Q |
212 |
gcaactgacagaattcaa |
229 |
Q |
| |
|
|||| |||| || ||||| |
|
|
| T |
10098242 |
gcaattgacggagttcaa |
10098225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 2e-69; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 33033175 - 33033391
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33033175 |
gagatgaatgataaagcggtcagtgctatcattctgtgtcttggggataaggtgttgagagaggtagcaagggagactactactgtgtctatgtggaata |
33033274 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| |||||||||||||||||||| |||||||| |||| |||||||| |||||| || |||| ||||||||| |
|
|
| T |
33033275 |
aacttgattcattgtacatgaccaagtccttggcacatagacaatgtctgaagcaacaact-tacttttaccgaatggtggagtcgaaacttataatgga |
33033373 |
T |
|
| Q |
212 |
gcaactgacagaattcaa |
229 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
33033374 |
gcaactgacggagttcaa |
33033391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 21034402 - 21034610
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | || |||| ||||||||||| || || ||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
21034402 |
gagatgaatgataaagcggtcagtgctatcattttgtggcttggggataaggtgttaagagaagtatcaagggagactactgctgtgtctatgtggaata |
21034501 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
||||||||| ||| ||||||||||||| || |||||||||||||| |||||||||||||| |||| |||||||| |||||| ||||||| ||||||||| |
|
|
| T |
21034502 |
aacttgattcattatacatgaccaagtctttggcacatagacaatgactgaaacaacaactctacttttaccgaatggtggagtcaaaacctataatgga |
21034601 |
T |
|
| Q |
212 |
gcaactgac |
220 |
Q |
| |
|
||||||||| |
|
|
| T |
21034602 |
gcaactgac |
21034610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 28891298 - 28891505
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||||||| ||||||| ||||||||||| ||| || ||| |||||||| ||| || ||||||||||||||||| |
|
|
| T |
28891298 |
gagatgaatgataaggcggtcagcgctatcattctgtgtcttggggataaggtgttgagagaagtatcaagggaggctaatgctgtgtctatgtggaata |
28891397 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
| ||||||| ||| ||||||||||||| || ||||||||||||||||||||||||||||| |||| |||||||| |||||| ||||||| ||||||||| |
|
|
| T |
28891398 |
agcttgattcattatacatgaccaagtctttggcacatagacaatgtctgaaacaacaactctacttttaccgaatggtggagtcaaaacctataatgga |
28891497 |
T |
|
| Q |
212 |
gcaactga |
219 |
Q |
| |
|
|||||||| |
|
|
| T |
28891498 |
gcaactga |
28891505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 16756907 - 16756690
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||||||| ||||||| ||||||||||| ||| || ||| |||||||| |||||| ||||||||||||||||| |
|
|
| T |
16756907 |
gagatgaatgataaggcggtcagcgctatcattctgtgtcttggggataaggtgttgagagaagtatcaagggaggctactgctgtgtctatgtggaata |
16756808 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccg-aaggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
| ||||||| ||| ||||||||||||| || ||||||||||| ||||||||||||||||| |||| ||| || | |||||| ||||||| ||||||||| |
|
|
| T |
16756807 |
agcttgattcattatacatgaccaagtctttggcacatagacagtgtctgaaacaacaactctacttttatcgtatggtggagtcaaaacctataatgga |
16756708 |
T |
|
| Q |
212 |
gcaactgacagaattcaa |
229 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
16756707 |
gcaactgacggagttcaa |
16756690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 28328442 - 28328659
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||||||| ||||||| ||||||||||| ||| || ||| |||||||| |||||| ||||||||||||||||| |
|
|
| T |
28328442 |
gagatgaatgataaggcggtcagcgctatcattctgtgtcttggggataaggtgttgagagaagtatcaagggaggctactgctgtgtctatgtggaata |
28328541 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccg-aaggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
| ||||||| ||| ||||||||||||| || ||||||||||| || |||||||||||||| |||| ||| || | |||||| ||||||| ||||||||| |
|
|
| T |
28328542 |
agcttgattcattatacatgaccaagtctttggcacatagacagtgcctgaaacaacaactctacttttatcgtatggtggagtcaaaacctataatgga |
28328641 |
T |
|
| Q |
212 |
gcaactgacagaattcaa |
229 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
28328642 |
gcaactgacggagttcaa |
28328659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 15945189 - 15945409
Alignment:
| Q |
16 |
atgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgtt---gtgtctatgtggaata |
112 |
Q |
| |
|
||||||||||||| | ||||||| |||||| | ||||||| ||||||| || | | |||||| |||||||||||||| | |||||||||||||||| |
|
|
| T |
15945189 |
atgaatgataaagtggtcagtgccatcattttgtgtcttggagataaggagttgggagaggtatcaagggagactactactactgtgtctatgtggaata |
15945288 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtgg---aatcaaaacatataat |
208 |
Q |
| |
|
||| ||||| || |||||||||||||| ||| ||||||||||||||||||||||||||||| |||| |||| ||| ||||| | ||||||| |||||| |
|
|
| T |
15945289 |
aacatgattcatcgtacatgaccaagtccttggcacatagacaatgtctgaaacaacaactctacttttactgaatggtggcgtactcaaaacctataat |
15945388 |
T |
|
| Q |
209 |
ggagcaactgacagaattcaa |
229 |
Q |
| |
|
|||| ||||||| || ||||| |
|
|
| T |
15945389 |
ggagaaactgacggagttcaa |
15945409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 130 - 229
Target Start/End: Complemental strand, 4819769 - 4819669
Alignment:
| Q |
130 |
atgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccg-aaggtggaatcaaaacatataatggagcaactgacagaattca |
228 |
Q |
| |
|
|||||||||| || ||||||||||| ||||||||||||||||| |||| ||| || | |||||| ||||||| ||||||||||||| |||| || |||| |
|
|
| T |
4819769 |
atgaccaagtctttggcacatagacagtgtctgaaacaacaactctacttttatcgtatggtggagtcaaaacctataatggagcaaatgacggagttca |
4819670 |
T |
|
| Q |
229 |
a |
229 |
Q |
| |
|
| |
|
|
| T |
4819669 |
a |
4819669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 32211293 - 32211224
Alignment:
| Q |
298 |
tttctcttgatatctcttattcttttcaaccagagctagacacgttcatgttttctgtcaatattgctca |
367 |
Q |
| |
|
|||||||||||||| |||||||||||| | || ||||||| ||||||||| |||||||||||||||| |
|
|
| T |
32211293 |
tttctcttgatatcacttattcttttcgatcaaagctagaggtattcatgtttcctgtcaatattgctca |
32211224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 2e-69; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 44016312 - 44016095
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||| |||||| ||||||||||| ||| |||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
44016312 |
gagatgaatgataaagcggtcagttctatcattctatgtctttgggataaggtgttgagagaggtagcaagggaaactattgttgtgtctatgtggaata |
44016213 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||| |||||||| ||||| ||||||| ||||||||| |
|
|
| T |
44016212 |
aacttgattcattgtacatgaccaagtccttggcacatagacaatgtctgaaacaacaactctacttttaccgaatagtggagtcaaaacctataatgga |
44016113 |
T |
|
| Q |
212 |
gcaactgacagaattcaa |
229 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
44016112 |
gcaactgacggagttcaa |
44016095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 25351886 - 25352103
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||| ||| || ||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
25351886 |
gagatgaatgataaagcggtcagcgctatcattctgtgtcttggggataaggtgttgagagaagtatcaagggagactactgctgtgtctatgtggaata |
25351985 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
||||||||| ||| ||||||||||||| || ||||||||||||||||||||||||||||| |||| |||||||| |||||| ||||||| ||||||||| |
|
|
| T |
25351986 |
aacttgattcattatacatgaccaagtctttggcacatagacaatgtctgaaacaacaactctacttttaccgaatggtggagtcaaaacctataatgga |
25352085 |
T |
|
| Q |
212 |
gcaactgacagaattcaa |
229 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
25352086 |
gcaactgacggagttcaa |
25352103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 7070329 - 7070546
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||||||| ||||||| ||||||||||| ||| || ||| |||||||| |||||| ||||||||||||||||| |
|
|
| T |
7070329 |
gagatgaatgataaggcggtcagcgctatcattctgtgtcttggggataaggtgttgagagaagtatcaagggaggctactgctgtgtctatgtggaata |
7070428 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccg-aaggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
| ||||||| ||| ||||||||||||| || |||||||| |||||||||||||||||||| |||| ||| || | |||||| ||||||| ||||||||| |
|
|
| T |
7070429 |
agcttgattcattatacatgaccaagtctttggcacataggcaatgtctgaaacaacaactctacttttatcgtatggtggagtcaaaacctataatgga |
7070528 |
T |
|
| Q |
212 |
gcaactgacagaattcaa |
229 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
7070529 |
gcaactgacggagttcaa |
7070546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 25405948 - 25406165
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||||||| ||||||| ||||||||||| ||| || ||| |||||||| |||||| ||||||||||||||||| |
|
|
| T |
25405948 |
gagatgaatgataaggcggtcagcgctatcattctgtgtcttggggataaggtgttgagagaagtatcaagggaggctactgctgtgtctatgtggaata |
25406047 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccg-aaggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
| ||||||| ||| ||||||||||||| || ||||||||||| ||||||||||||||||| |||| ||| || | |||||| ||||||| ||||||||| |
|
|
| T |
25406048 |
agcttgattcattatacatgaccaagtctttggcacatagacagtgtctgaaacaacaactctacttttatcgtatggtggagtcaaaacctataatgga |
25406147 |
T |
|
| Q |
212 |
gcaactgacagaattcaa |
229 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
25406148 |
gcaactgacggagttcaa |
25406165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 3324434 - 3324217
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||||||| ||||||| ||| ||||||| ||| || ||| ||||||| |||||| ||||||||||||||||| |
|
|
| T |
3324434 |
gagatgaatgataaggcggtcagcgctatcattctgtgtcttggggacaaggtgttgagagaagtataaagggaggctactgctgtgtctatgtggaata |
3324335 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccg-aaggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
| ||||||| ||| ||||||||||||| || ||||||||||| ||||||||||||||||| |||| ||| || | |||||| ||||||| ||||||||| |
|
|
| T |
3324334 |
agcttgattcattatacatgaccaagtctttggcacatagacagtgtctgaaacaacaactctacttttatcgtatggtggagtcaaaacctataatgga |
3324235 |
T |
|
| Q |
212 |
gcaactgacagaattcaa |
229 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
3324234 |
gcaactgacggagttcaa |
3324217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 2e-69; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 20054407 - 20054190
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||| ||| || ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20054407 |
gagatgaatgataaagcggtcagcgctatcattctgtgtcttggggataaggtgttgagagaagtatcaagggagactactgttgtgtctatgtggaata |
20054308 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
||||||||| ||| ||||||||||||| || ||||||||||||||||||||||||||||| |||| |||||||| |||||| ||||||| ||||||||| |
|
|
| T |
20054307 |
aacttgattcattatacatgaccaagtctttggcacatagacaatgtctgaaacaacaactctacttttaccgaatggtggagtcaaaacctataatgga |
20054208 |
T |
|
| Q |
212 |
gcaactgacagaattcaa |
229 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
20054207 |
gcaactgacggagttcaa |
20054190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 22716880 - 22716663
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||| ||| || ||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
22716880 |
gagatgaatgataaagcggtcagcgctatcattctgtgtcttggggataaggtgttgagagaagtatcaagggagactactgctgtgtctatgtggaata |
22716781 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
||||||||| ||| ||||||||||||| || ||||||||||||||||||||||||||||| |||| |||||||| |||||| ||||||| ||||||||| |
|
|
| T |
22716780 |
aacttgattcattatacatgaccaagtctttggcacatagacaatgtctgaaacaacaactctacttttaccgaatggtggagtcaaaacctataatgga |
22716681 |
T |
|
| Q |
212 |
gcaactgacagaattcaa |
229 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
22716680 |
gcaactgacggagttcaa |
22716663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 28457151 - 28456933
Alignment:
| Q |
12 |
tgagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaat |
111 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||| ||||||| ||||||||||| ||| |||||| || | |||||||||||||| |||||||||||| |
|
|
| T |
28457151 |
tgagatgaatgataaagcgatcagtgccatcattctgtgtcttggggataaggtgttgagagaggtaacatgagagactactgttgtttctatgtggaat |
28457052 |
T |
|
| Q |
112 |
aaacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatgg |
210 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||| | |||| |||||||| |||||| ||||||| |||||||| |
|
|
| T |
28457051 |
aaacttgattcattgtacatgaccaagtccttgtcacatagacaatgtctgaaacaacaattctacttttaccgaatggtggagtcaaaacctataatgg |
28456952 |
T |
|
| Q |
211 |
agcaactgacagaattcaa |
229 |
Q |
| |
|
| ||||||| || ||||| |
|
|
| T |
28456951 |
aataactgacggagttcaa |
28456933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 2736739 - 2736956
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||||||| ||||||| ||||||||||| || || ||| |||||||| |||||| ||||||||||||||||| |
|
|
| T |
2736739 |
gagatgaatgataaggcggtcagcgctatcattctgtgtcttggggataaggtgttgaaagaagtatcaagggaggctactgctgtgtctatgtggaata |
2736838 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccg-aaggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
| ||||||| ||| ||||||||||||| || |||||||| |||| ||||||||||||||| |||| ||| || | |||||| ||||||| ||||||||| |
|
|
| T |
2736839 |
agcttgattcattatacatgaccaagtctttggcacataggcaatttctgaaacaacaactctacttttatcgtatggtggagtcaaaacctataatgga |
2736938 |
T |
|
| Q |
212 |
gcaactgacagaattcaa |
229 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
2736939 |
gcaactgacggagttcaa |
2736956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 39680580 - 39680797
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||| || |||| ||||||||||| |||||| ||||||||||| ||| || ||| |||||||| |||||| ||||||||||||||||| |
|
|
| T |
39680580 |
gagatgaatgataaggcagtcagcgctatcattctgtgtcttagggataaggtgttgagagaagtatcaagggaggctactgctgtgtctatgtggaata |
39680679 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccg-aaggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
| ||||||| ||| ||||||||||||| || ||||||||||| || |||||||||||||| |||| ||| || | |||||| ||||||| ||||||||| |
|
|
| T |
39680680 |
agcttgattcattatacatgaccaagtctttggcacatagacagtgcctgaaacaacaactctacttttatcgtatggtggagtcaaaacctataatgga |
39680779 |
T |
|
| Q |
212 |
gcaactgacagaattcaa |
229 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
39680780 |
gcaactgacggagttcaa |
39680797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 57 - 221
Target Start/End: Complemental strand, 10942113 - 10941948
Alignment:
| Q |
57 |
ggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaataaacttgatttattgtacatgaccaagtgcttagcacatagacaa |
156 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||||||| |||| |||||| ||||| |||| || |||| ||||||| |
|
|
| T |
10942113 |
ggataaggtgttgagaaaggtagcaagggagactactgatgtgtctatatggaataaactagattcattgtatatgacaaagtctttggcacgtagacaa |
10942014 |
T |
|
| Q |
157 |
tgtctgaaacaacaactatactattac-cgaaggtggaatcaaaacatataatggagcaactgaca |
221 |
Q |
| |
|
||||||||||||||||| |||| |||| || |||||| |||||| |||||||||||||||||||| |
|
|
| T |
10942013 |
tgtctgaaacaacaactctacttttactggatggtggagtcaaaatatataatggagcaactgaca |
10941948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 57 - 221
Target Start/End: Complemental strand, 10947982 - 10947817
Alignment:
| Q |
57 |
ggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaataaacttgatttattgtacatgaccaagtgcttagcacatagacaa |
156 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||||||| |||| |||||| ||||| |||| || |||| ||||||| |
|
|
| T |
10947982 |
ggataaggtgttgagaaaggtagcaagggagactactgatgtgtctatatggaataaactagattcattgtatatgacaaagtctttggcacgtagacaa |
10947883 |
T |
|
| Q |
157 |
tgtctgaaacaacaactatactattac-cgaaggtggaatcaaaacatataatggagcaactgaca |
221 |
Q |
| |
|
||||||||||||||||| |||| |||| || |||||| |||||| |||||||||||||||||||| |
|
|
| T |
10947882 |
tgtctgaaacaacaactctacttttactggatggtggagtcaaaatatataatggagcaactgaca |
10947817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 22985792 - 22985861
Alignment:
| Q |
298 |
tttctcttgatatctcttattcttttcaaccagagctagacacgttcatgttttctgtcaatattgctca |
367 |
Q |
| |
|
|||||||||||||| |||||||||||| | || ||||||| ||||||||| || ||||||||||||| |
|
|
| T |
22985792 |
tttctcttgatatcacttattcttttcgatcaaagctagaggtattcatgtttcctatcaatattgctca |
22985861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 37781172 - 37781103
Alignment:
| Q |
298 |
tttctcttgatatctcttattcttttcaaccagagctagacacgttcatgttttctgtcaatattgctca |
367 |
Q |
| |
|
|||||||||||||| |||||||||||| | || || |||| ||||||||| |||||||||||||||| |
|
|
| T |
37781172 |
tttctcttgatatcacttattcttttcgatcaaagttagaggtattcatgtttcctgtcaatattgctca |
37781103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 1e-68; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 4558842 - 4559050
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||||| | | |||||||||||||| ||||||| ||||||||||| ||| ||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
4558842 |
gagatgaatgataaagaggttagtgctatcattctgtgtcttggggataaggtgtggagagaggtaggaagggagactattgttgtgtctatgtggaata |
4558941 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||||||| |||| |||||||| |||||| ||||||| ||||||||| |
|
|
| T |
4558942 |
aacttgattcattgtacatgaccaagtacttggtacatagacaatgtctgaaacaacaactctacttttaccgaatggtggagtcaaaacctataatgga |
4559041 |
T |
|
| Q |
212 |
gcaactgac |
220 |
Q |
| |
|
||||||||| |
|
|
| T |
4559042 |
gcaactgac |
4559050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 15312852 - 15313057
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| ||||||| |||||| ||| ||| || ||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
15312852 |
gagatgaatgataaagcggtcagcgctatcattctgtgtcttggagataagatgttgagagaagtatcaagggagactactgctgtgtctatgtggaata |
15312951 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||| |||| ||| |||| | |||| ||||||| ||||||||| |
|
|
| T |
15312952 |
aacttgatttattatacatgaccaagtctttggcacatagacaatgtctgaaacaacaactctacttttatcgaatgatggagtcaaaacctataatgga |
15313051 |
T |
|
| Q |
212 |
gcaact |
217 |
Q |
| |
|
|||||| |
|
|
| T |
15313052 |
gcaact |
15313057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 16633023 - 16633231
Alignment:
| Q |
12 |
tgagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaat |
111 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||||||| ||| ||| ||||||||||| ||| |||| ||||||||||||||||| |||||||||||| ||| |
|
|
| T |
16633023 |
tgagatgaatgatgaagcggtcagtgccatcattctgtgtattggggataaggtgttgagagaggcagcaagggagactactgatgtgtctatgtgaaat |
16633122 |
T |
|
| Q |
112 |
aaacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatgg |
210 |
Q |
| |
|
||| |||||| ||||||||||||||||| ||| ||||||| ||||||| ||||||||||||| |||| ||||||| |||||| ||||||| | ||||| |
|
|
| T |
16633123 |
aaaattgattcattgtacatgaccaagtccttggcacatacacaatgtttgaaacaacaactctacttataccgaatggtggagtcaaaacccacaatgg |
16633222 |
T |
|
| Q |
211 |
agcaactga |
219 |
Q |
| |
|
|| |||||| |
|
|
| T |
16633223 |
agtaactga |
16633231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 302 - 388
Target Start/End: Complemental strand, 26633389 - 26633303
Alignment:
| Q |
302 |
tcttgatatctcttattcttttcaaccagagctagacacgttcatgttttctgtcaatattgctcataacaaatgttgaaataagtg |
388 |
Q |
| |
|
|||||||||| |||||||||||| | ||||| |||| || ||||||||| |||||||||| |||||| | ||||||||||||| |
|
|
| T |
26633389 |
tcttgatatcacttattcttttcgatcagagttagagacattcatgtttcttgtcaatattcttcataaaaggggttgaaataagtg |
26633303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 122; Significance: 4e-62; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 16859 - 17076
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||| ||| ||||||| ||| || ||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
16859 |
gagatgaatgataaagcggccagtgctatcattctgtgtcttggggacaaggtgttgagagaagtatcaagggagactactgctgtgtctatgtggaata |
16958 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
| ||||||| ||| ||||||||||||| || ||||||||||| ||||||||||||||||| |||| |||||||| |||||||||||||| ||||||||| |
|
|
| T |
16959 |
agcttgattcattatacatgaccaagtctttggcacatagacagtgtctgaaacaacaactctacttttaccgaatggtggaatcaaaacctataatgga |
17058 |
T |
|
| Q |
212 |
gcaactgacagaattcaa |
229 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
17059 |
gcaactgacggagttcaa |
17076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 1e-61; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 9522259 - 9522467
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||| ||| || ||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
9522259 |
gagatgaatgataaagcggtcagcgctatcattctgtgtcttggggataaggtgttgagagaagtatcaagggagactactgctgtgtctatgtggaata |
9522358 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
||||||||| ||| ||||||||||||| || ||||||||||| ||||||||||||||||| |||| ||| |||| |||||| ||||||| ||||||||| |
|
|
| T |
9522359 |
aacttgattcattatacatgaccaagtctttggcacatagacagtgtctgaaacaacaactctacttttatcgaatggtggagtcaaaacctataatgga |
9522458 |
T |
|
| Q |
212 |
gcaactgac |
220 |
Q |
| |
|
||||||||| |
|
|
| T |
9522459 |
gcaactgac |
9522467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 2400871 - 2400654
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||| ||||||| ||||||||||| ||| || ||| ||||||| ||||||||||||||||| ||||||| |
|
|
| T |
2400871 |
gagatgaatgataaagcggtcagtgatatcattctgtgtcttggggataaggtgttgagagaagtatcaagggaaactactgttgtgtctatatggaata |
2400772 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
||||| ||| || |||||||| |||| || ||||||||||||||||||||||||||||| |||| |||||||| |||||| |||||| ||||||||| |
|
|
| T |
2400771 |
aacttaattcataatacatgactaagtctttggcacatagacaatgtctgaaacaacaactctacttttaccgaatggtggagtcaaaatctataatgga |
2400672 |
T |
|
| Q |
212 |
gcaactgacagaattcaa |
229 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
2400671 |
gcaactgacagagttcaa |
2400654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 14997570 - 14997786
Alignment:
| Q |
12 |
tgagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaat |
111 |
Q |
| |
|
||||||||||||||| | | | ||||| |||||| | ||||||| ||||||||| | ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14997570 |
tgagatgaatgataacgtggttagtgccatcattatgtgtcttggggataaggtattgagataggtagcaagggagactactgttgtgtctatgtggaat |
14997669 |
T |
|
| Q |
112 |
aaacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatgg |
210 |
Q |
| |
|
| |||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||| |||| ||||| || |||||| ||||||| |||||||| |
|
|
| T |
14997670 |
agacttgatt--ttgtacatgaccaagtccttggcacatagacaatgtctgaaacaacaactctacttttaccaaatggtggagtcaaaacctataatgg |
14997767 |
T |
|
| Q |
211 |
agcaactgacagaattcaa |
229 |
Q |
| |
|
|||||||||| || ||||| |
|
|
| T |
14997768 |
agcaactgacggagttcaa |
14997786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 6e-61; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 31782109 - 31781890
Alignment:
| Q |
12 |
tgagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaat |
111 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| |||| ||||||| ||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31782109 |
tgagatgaatgataaagcgatcagtgccatcgttctgtgtcttggggataaggtgttgagagaggtagcaagggagactattgttgtgtctatgtggaat |
31782010 |
T |
|
| Q |
112 |
aaacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatc-aaaacatataatg |
209 |
Q |
| |
|
|||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||| |||| |||||||| ||| || || ||||| |||||| |
|
|
| T |
31782009 |
aaacttgattcattgtacatgaccaagtcctggacacatagacaatgtctgaaacaacaactctacttttaccgaatggtcgagtcaaaaaccaataatg |
31781910 |
T |
|
| Q |
210 |
gagcaactgacagaattcaa |
229 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
31781909 |
aagcaactgacggaattcaa |
31781890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 10627892 - 10628110
Alignment:
| Q |
12 |
tgagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaat |
111 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||| ||||||| ||||| ||| | ||| ||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10627892 |
tgagatgaatgataaagctgtcagtgccatcattctgtgtcttggggatacggtatagagagagttagcaagggagactattgttgtgtctatgtggaat |
10627991 |
T |
|
| Q |
112 |
aaacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatgg |
210 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||||||| |||| | |||||| |||||| ||||||| ||||||| |
|
|
| T |
10627992 |
aaacttgattcattgtgcatgaccaagtccttggcacatagacaatgtctgaaacaacaactctactttaaccgaatggtggagtcaaaaccgataatgg |
10628091 |
T |
|
| Q |
211 |
agcaactgacagaattcaa |
229 |
Q |
| |
|
|||||||||| || ||||| |
|
|
| T |
10628092 |
agcaactgacggagttcaa |
10628110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 25446021 - 25446238
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaata |
112 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||||||| ||||||| ||||||||||| ||| || ||| |||||||| |||||| | ||||||||||||||| |
|
|
| T |
25446021 |
gagatgaatgataaggcggtcagcgctatcattctgtgtcttggggataaggtgttgagagaagtatcaagggaggctactgctatgtctatgtggaata |
25446120 |
T |
|
| Q |
113 |
aacttgatttattgtacatgaccaagtgcttagcacatagacaatgtctgaaacaacaactatactattaccg-aaggtggaatcaaaacatataatgga |
211 |
Q |
| |
|
||||||||| ||| ||||||| ||||| || ||||||||||| ||||||||||||||||| |||| ||| || |||||||| ||||||| ||||||||| |
|
|
| T |
25446121 |
aacttgattcattatacatgatcaagtctttggcacatagacagtgtctgaaacaacaactctacttttatcgaaaggtggagtcaaaacctataatgga |
25446220 |
T |
|
| Q |
212 |
gcaactgacagaattcaa |
229 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
25446221 |
gcaactgacggagttcaa |
25446238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 28786936 - 28787079
Alignment:
| Q |
16 |
atgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactgttgtgtctatgtggaataaac |
115 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||| ||||||||||| ||| || ||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28786936 |
atgaatgataaagcggtcagtgctatcattctgtgtcttggggataaggtgttgagagaagtatcaagggagactactgctgtgtctatgtggaataaac |
28787035 |
T |
|
| Q |
116 |
ttgatttattgtacatgaccaagtgcttagcacatagacaatgt |
159 |
Q |
| |
|
|||||| ||| |||||| |||||| || ||||||||||||||| |
|
|
| T |
28787036 |
ttgattcattatacatggccaagtctttggcacatagacaatgt |
28787079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 28788402 - 28788464
Alignment:
| Q |
159 |
tctgaaacaacaactatactattaccgaa-ggtggaatcaaaacatataatggagcaactgac |
220 |
Q |
| |
|
|||||||||||||| ||||| ||| |||| |||||| ||||||| |||||||||||||||||| |
|
|
| T |
28788402 |
tctgaaacaacaaccatacttttatcgaacggtggagtcaaaacctataatggagcaactgac |
28788464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 16682 - 16601
Alignment:
| Q |
13 |
gagatgaatgataaagcgttcagtgctatcattctttgtcttgaggataaggtgtcgagtgaggtagcaagggagactactg |
94 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||| ||| || ||| ||||||||||||||| |
|
|
| T |
16682 |
gagatgaatgataaagcggtcagcgctatcattctgtgtcttggggataaggtgttgagagaagtatcaagggagactactg |
16601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University