View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18471_high_10 (Length: 416)
Name: NF18471_high_10
Description: NF18471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18471_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 134 - 399
Target Start/End: Original strand, 3825192 - 3825451
Alignment:
| Q |
134 |
atatgaacctataagcatttttaaaggttctctgaaaaactatatttaaaggtgtacgttgttttcaattgatatattcnnnnnnnnnnnnnnaaaaagg |
233 |
Q |
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| T |
3825192 |
atatgaacctataactatttttaaaggttctctgaaaaactatatttaaaggtgtacgtagttttcaattgatatattctttttttt------aaaaagg |
3825285 |
T |
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| Q |
234 |
aaaatgaaatatattaaatcaaatcgagatatctacctacataaagagtgcaaggttagggttatggctctaaagtctttacaagctggaatacaatgca |
333 |
Q |
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| T |
3825286 |
aaaatgaaatatattaaatcaaatcgagatctctacctacacaaagagtgcaaggttagggttatggctctaaagtctttacaagctggaatacaatgca |
3825385 |
T |
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| Q |
334 |
aacaccaacaagaaaaacggcaaagcactagcttggttaaacttgatgacttttagctattggtcc |
399 |
Q |
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| T |
3825386 |
aacaccaacaagaaaaacggcaaagcactagcttggttaaacttgatgacttttagctattggtcc |
3825451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 3825101 - 3825213
Alignment:
| Q |
13 |
cataggatataataggtgaggagaaactatagttgattatgctatgatgaacgtgactgttgacaaattgcaagataaaaccacgctttaaatatgaacc |
112 |
Q |
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| T |
3825101 |
cataggatataataggtgaggagaaactatagttgattatgctatgatgaacgtgactgttgacaaattgcaagataaaaccacgctttaaatatgaacc |
3825200 |
T |
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| Q |
113 |
tataactattttt |
125 |
Q |
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| T |
3825201 |
tataactattttt |
3825213 |
T |
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