View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18471_high_11 (Length: 411)

Name: NF18471_high_11
Description: NF18471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18471_high_11
NF18471_high_11
[»] chr2 (3 HSPs)
chr2 (19-249)||(16248334-16248564)
chr2 (19-249)||(45623117-45623347)
chr2 (23-249)||(9809348-9809577)
[»] chr4 (1 HSPs)
chr4 (19-249)||(31888764-31888994)
[»] chr8 (3 HSPs)
chr8 (19-249)||(34578464-34578696)
chr8 (250-396)||(28495824-28495971)
chr8 (19-251)||(7934987-7935220)
[»] chr7 (4 HSPs)
chr7 (82-249)||(27128901-27129070)
chr7 (23-109)||(39940047-39940135)
chr7 (170-251)||(39939166-39939247)
chr7 (188-249)||(36325328-36325390)
[»] chr3 (2 HSPs)
chr3 (170-250)||(52623599-52623679)
chr3 (188-249)||(54725446-54725508)
[»] chr5 (1 HSPs)
chr5 (197-249)||(17019991-17020043)


Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 16248564 - 16248334
Alignment:
Q  19 agagagaggattgagaaataaagcccacgaaaattgatggaaaaatgaataggacaaacttttctctctcctctaattttctcttccctctgcgtctcaa 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16248564 agagagaggattgagaaataaagcccacgaaaattgaaggaaaaatgaataggacaaacttttctctctcctctaattttctcttccctctgcgtctcaa 16248465  T
Q  119 cctttagatcaatccaacagtccagaatttcacaagacacacaacaggacattaaaaggcagtaggggatcatatccctaagggtggtacaaagtggtat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16248464 cctttagatcaatccaacagtccagaatttcacaagacacacaacaggacattaaaaggcagtaggggatcatatccctaagggtggtacaaagtggtat 16248365  T
Q  219 gccacctaagtatgtttacctatcaccactc 249  Q
    |||||||||||||||||||||||||||||||    
T  16248364 gccacctaagtatgtttacctatcaccactc 16248334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 45623347 - 45623117
Alignment:
Q  19 agagagaggattgagaaataaagcccacgaaaattgatggaaaa-atgaataggacaaacttttctctctcctctaattttctcttccctctgcgtctca 117  Q
    |||||||||||||||||| ||||||||| |||||||| |||||| |||||||||| | |||||||||||||| |||||||||||||||||||| ||||||    
T  45623347 agagagaggattgagaaagaaagcccacaaaaattgaaggaaaatatgaataggatagacttttctctctcccctaattttctcttccctctgtgtctca 45623248  T
Q  118 acctttagatcaatccaacagtccagaatttcacaagacacacaacaggacattaaaaggcagtaggggatcatatccctaagggtggtacaaagtggta 217  Q
    ||||||||||||||||||   || |||||| ||||||||| |||||| || ||||||| |||| || |||||||||||||||||||||||||||||||||    
T  45623247 acctttagatcaatccaaagatctagaattgcacaagacatacaacatgatattaaaa-gcaggagaggatcatatccctaagggtggtacaaagtggta 45623149  T
Q  218 tgccacctaagtatgtttacctatcaccactc 249  Q
    |||||||||||||||| |||||||||||||||    
T  45623148 tgccacctaagtatgtatacctatcaccactc 45623117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 249
Target Start/End: Complemental strand, 9809577 - 9809348
Alignment:
Q  23 agaggattgagaaataaagcccacgaaaattgatggaaaaa--tgaataggacaaacttttctctctcctctaattttctcttccctc-tgcgtctcaac 119  Q
    |||||||||||||| | || || |||||||||| |||||||  ||||||  ||||||||||||||||||||||||||||||||||||| || ||||||||    
T  9809577 agaggattgagaaagagagtccccgaaaattgaaggaaaaaaatgaataatacaaacttttctctctcctctaattttctcttccctcttgtgtctcaac 9809478  T
Q  120 ctttagatcaatccaacagtccagaatttcacaagacacacaacaggacattaaaaggcagtaggggatcatatccctaagggtggtacaaa-gtggtat 218  Q
    |||||||| |||| || |||  ||||||  |||||||| ||||||     ||||||||||  |||||||||| | |||||| |||||||||| |||||||    
T  9809477 ctttagatgaatctaagagtttagaattgtacaagacaaacaacattgttttaaaaggcatgaggggatcat-ttcctaagagtggtacaaaggtggtat 9809379  T
Q  219 gccacctaagtatgtttacctatcaccactc 249  Q
    |||||||||| ||||  |||||||| |||||    
T  9809378 gccacctaagcatgtccacctatcatcactc 9809348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 31888764 - 31888994
Alignment:
Q  19 agagagaggattgagaaataaagcccacgaaaattgatggaaaaatgaataggacaaacttttctctctcctctaattttctcttccctctgcgtctcaa 118  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31888764 agagagaggattgagaaataaagcccactaaaattgaaggaaaaatgaataggacaaacttttctctctcctctaattttctcttccctctgcgtctcaa 31888863  T
Q  119 cctttagatcaatccaacagtccagaatttcacaagacacacaacaggacattaaaaggcagtaggggatcatatccctaagggtggtacaaagtggtat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31888864 cctttagatcaatccaacagtccagaatttcacaagacacacaacaggacattaaaaggcagtaggggatcatatccctaagggtgttacaaagtggtat 31888963  T
Q  219 gccacctaagtatgtttacctatcaccactc 249  Q
    |||||||||||||||||||||||||||||||    
T  31888964 gccacctaagtatgtttacctatcaccactc 31888994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 151; Significance: 9e-80; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 34578696 - 34578464
Alignment:
Q  19 agagagaggattgagaaataaagcccacgaaaattgatggaaaa-atgaataggacaaacttttctctctcctctaattttctcttccctct--gcgtct 115  Q
    |||||||||||||||||| |||||||||||||||||| |||||| |||||||||| | ||||||||||||||  ||||||||||||||||||  | ||||    
T  34578696 agagagaggattgagaaagaaagcccacgaaaattgaaggaaaatatgaataggatagacttttctctctcccttaattttctcttccctctttgtgtct 34578597  T
Q  116 caacctttagatcaatccaacagtccagaatttcacaagacacacaacaggacattaaaaggcagtaggggatcatatccctaagggtggtacaaagtgg 215  Q
    ||||||||||||||||||||||||| |||||| ||||||||| |||||| || |||||||| ||| ||||||||||||||||||||||||||||||||||    
T  34578596 caacctttagatcaatccaacagtctagaattgcacaagacatacaacatgatattaaaag-caggaggggatcatatccctaagggtggtacaaagtgg 34578498  T
Q  216 tatgccacctaagtatgtttacctatcaccactc 249  Q
    |||||||||||||||||| |||||||||||||||    
T  34578497 tatgccacctaagtatgtatacctatcaccactc 34578464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 250 - 396
Target Start/End: Complemental strand, 28495971 - 28495824
Alignment:
Q  250 atactttatatattttacttcctcgtgacccacgtgtagtgcgggtggataaatgtcatttattaaccggtgaaataatggttcacatgat-aaattgaa 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  28495971 atactttatatattttacttcctcgtgacccacgtgtagtgcgggtggataaatgtcatttattaaccgctgaaataatggttcacatgataaaattgaa 28495872  T
Q  349 ttacaaaaataactaaataggataaccttatccttttttagtatattt 396  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  28495871 ttacaaaaataactaaataggataaccttatcctttttgagtatattt 28495824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 7934987 - 7935220
Alignment:
Q  19 agagagaggattgagaaataaagcccacgaaaattgatggaaaa-atgaataggacaaacttttctctctcctctaattttctcttccctct--gcgtct 115  Q
    |||||||||||||||||| |||||||||||||||||| |||||| ||| |||||| | |||||||||||||| |||||||||||||||||||  | ||||    
T  7934987 agagagaggattgagaaagaaagcccacgaaaattgaaggaaaatatgtataggatagacttttctctctcccctaattttctcttccctctttgtgtct 7935086  T
Q  116 caacctttagatcaatccaacagtccagaatttcacaagacacacaacaggacattaaaaggcagtaggggatcatatccctaagggtggtacaaagtgg 215  Q
    ||||||||||||||||||||||||| |||||| ||||| ||| |||||| || ||||||| |||| |||||||||||||||||||| ||||||||||| |    
T  7935087 caacctttagatcaatccaacagtctagaattgcacaacacatacaacatgatattaaaa-gcaggaggggatcatatccctaaggatggtacaaagtag 7935185  T
Q  216 tatgccacctaagtatgtttacctatcaccactcat 251  Q
    ||||||||| | |||||| |||||||||||||||||    
T  7935186 tatgccacc-atgtatgtatacctatcaccactcat 7935220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 82 - 249
Target Start/End: Original strand, 27128901 - 27129070
Alignment:
Q  82 ctctctcctctaattttctcttccctct--gcgtctcaacctttagatcaatccaacagtccagaatttcacaagacacacaacaggacattaaaaggca 179  Q
    |||||||||||||||||||||| |||||  | |||||||||||||||||||||||||| ||||||||| ||||||||| | |  ||||  ||||  |  |    
T  27128901 ctctctcctctaattttctctttcctctttgtgtctcaacctttagatcaatccaacaatccagaattgcacaagacagatagtaggatgttaacggaaa 27129000  T
Q  180 gtaggggatcatatccctaagggtggtacaaagtggtatgccacctaagtatgtttacctatcaccactc 249  Q
    | ||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  27129001 ggaggggatcacatccctaaggatggtacaaagtggtatgccacctaagtatgtatacctatcaccactc 27129070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 39940047 - 39940135
Alignment:
Q  23 agaggattgagaaataaagcccacgaaaattgatggaaaa--atgaataggacaaacttttctctctcctctaattttctcttccctct 109  Q
    |||||||||||||| | || || |||||||||| ||||||  |||||||  |||||||||| |||||||||||||||||||||||||||    
T  39940047 agaggattgagaaagagagtccgcgaaaattgaaggaaaaaaatgaataatacaaacttttatctctcctctaattttctcttccctct 39940135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 170 - 251
Target Start/End: Complemental strand, 39939247 - 39939166
Alignment:
Q  170 ttaaaaggcagtaggggatcatatccctaagggtggtacaaag-tggtatgccacctaagtatgtttacctatcaccactcat 251  Q
    ||||||||||  |||||||||| ||| |||| ||||||||||| |||||||||||||||||||||  |||||||| |||||||    
T  39939247 ttaaaaggcacgaggggatcatttcc-taagagtggtacaaaggtggtatgccacctaagtatgtccacctatcatcactcat 39939166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 36325390 - 36325328
Alignment:
Q  188 tcatatccctaagggtggtacaaag-tggtatgccacctaagtatgtttacctatcaccactc 249  Q
    |||||||| |||||||||||||||| |||||||||||||||| ||||  |||||||| |||||    
T  36325390 tcatatccttaagggtggtacaaaggtggtatgccacctaaggatgtcaacctatcatcactc 36325328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 52623599 - 52623679
Alignment:
Q  170 ttaaaaggcagtaggggatcatatccctaagggtggtacaaag-tggtatgccacctaagtatgtttacctatcaccactca 250  Q
    ||||||||||  |||||||||| ||| |||| ||||||||||| |||||||||||||||| ||||  |||||||| ||||||    
T  52623599 ttaaaaggcaagaggggatcatttcc-taagagtggtacaaaggtggtatgccacctaagcatgtccacctatcatcactca 52623679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 54725446 - 54725508
Alignment:
Q  188 tcatatccctaagggtggtacaaag-tggtatgccacctaagtatgtttacctatcaccactc 249  Q
    |||||||| || ||||||||||||| |||||||||||||||| ||||  |||||||| |||||    
T  54725446 tcatatccttaggggtggtacaaaggtggtatgccacctaaggatgtcaacctatcatcactc 54725508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 17020043 - 17019991
Alignment:
Q  197 taagggtggtacaaagtggtatgccacctaagtatgtttacctatcaccactc 249  Q
    |||| ||||||| ||||||||| |||||||||| ||| |||||||||||||||    
T  17020043 taagagtggtaccaagtggtattccacctaagtgtgtatacctatcaccactc 17019991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University