View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18471_high_13 (Length: 380)
Name: NF18471_high_13
Description: NF18471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18471_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 27348628 - 27348988
Alignment:
| Q |
19 |
ccttcggcatttccgccacttttcaatgttgttgttgtgaatattatttatttacttattcatggaagatactgaagcagcttcatctttcaaaatgaac |
118 |
Q |
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| T |
27348628 |
ccttcggcatttccgccacttttcaatgttgtttttgtgaatattatttatttacttattcatggaagatactgaagcagcttcatctttcaaaatgaac |
27348727 |
T |
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| Q |
119 |
aatcatatggaacaattaaccataccacagtttaatgcatcatcacaatcacaaatgcgaactgttactagaaatcatcatcagaatcaaagaggaggtg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27348728 |
aatcatatggaacaattaaccataccacagtttaatgcatcatcacaatcacaaatgcgaactgttactagaaatcatcatcataatcaaagaggaggtg |
27348827 |
T |
|
| Q |
219 |
gtataccaccatctcacccacaccagatcccacctatttcaccttactctcacatcaacaatcagatcccggtttcacggccgcaaatgccgtcgcacag |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27348828 |
gtataccaccatctcacccacaccagatcccacctatttcaccttactctcacatgaacaatcagatcccggtttcacggccgcaaatgccgtcgcacag |
27348927 |
T |
|
| Q |
319 |
tacaagtcctacaccttcccacacacgatcactctctcaaccctctttcttctctctcgac |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27348928 |
tacaagtcctacaccttcccacacacgatcactctctcaaccctcttttttctctctcgac |
27348988 |
T |
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